Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2322g00015 ATGGCTACAACAATAGCTTGTGATTTTTCTTCTTTGGAATCTCTTCAACACTACTTGCTTGAGCCTGAACATGTTTCATCCTCTTACAATCCATTTCCAAGCCCTACCATTAACCATGATGCCAGTAAATCATCAGCATGCAAAAGGGTTACACCTGCGGCGGCGCGTGAGGTTCACGCGCCACCGAGATGGAAGCACTACAGGGGCGTGAGGCGCAGGCCGTGGGGGAAGTTCACGGCGGAGATAAGGGACCCGAATAAAAACGGTGCAAGGGTTTGGCTTGGGACTTATGAGACTGAAGAGGAAGCGGGTTTGGCTTTTGATAGAGCTGCTTTCAAGATGCGTGGAAGAAAAGCCAAGTTGAATTTTCCCCACCTTATTGGCTCCCACGCGCCGCCGCAGGAAGAGGTGAGGGTGGTGGAAGCTTCGAAGCGGAACTCGCCAGAGCCTTGTTCACCGCCTTCACTGGCTTCGGAGTCACAGGGGTCAAAGAGGAGGAAGAACTTAGCAGATGTACTAAATAGGTTAGCCAAGAATAGAAACCAAGTACTGAAGGTGTTTGAAATTGGTTCAGAGGCAAATGGTAATTGCGATGTTGATCAATGGTTGAATGATTGTGGTGTAATCTGGTGTTCATAA 639 0.4883 MATTIACDFSSLESLQHYLLEPEHVSSSYNPFPSPTINHDASKSSACKRVTPAAAREVHAPPRWKHYRGVRRRPWGKFTAEIRDPNKNGARVWLGTYETEEEAGLAFDRAAFKMRGRKAKLNFPHLIGSHAPPQEEVRVVEASKRNSPEPCSPPSLASESQGSKRRKNLADVLNRLAKNRNQVLKVFEIGSEANGNCDVDQWLNDCGVIWCS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2322g00015 212 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 MobiDBLite consensus disorder prediction 148 163 - -
Gabi2322g00015 212 PANTHER DNA-BINDING DOMAIN 45 167 IPR044808 GO:0003700|GO:0009873
Gabi2322g00015 212 CDD AP2 65 126 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 Gene3D AP2/ERF domain 65 125 IPR036955 GO:0003700|GO:0006355
Gabi2322g00015 212 FunFam Ethylene-responsive transcription factor 2 65 125 - -
Gabi2322g00015 212 MobiDBLite consensus disorder prediction 139 165 - -
Gabi2322g00015 212 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
Gabi2322g00015 212 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2322g00015 Gabi-Chr2322 206252 206890 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2322g00015 59 161 AP2-EREBP Transcription Factor Family AT2G44840 64.423 1.76e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2322g00015 AP2 9.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2322g00015 K09286 - gmx:100805648 266.544