Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2322g00012 ATGGTTGAGAGGTCCATGGAACTTGAAGCTATTAGCAAGGAAGCTGTTGATCTGGAGAACATTTCTCTTGAGGAGGTTTTTGATAATCTTAAATGCACAAGAGAAGGTTTAAGCTCCGAGCAAGTACAAGCAAGGCTAGACTTGTTTGGATACAATAAGCTTGAAGAAAAGAAGGAAAGTAAGATACTGAAGTTTTTGGGCTTTATGTGGAATCCTCTGTCATGGGTTATGGAAGCTGCTGCTATCATGGCTATAGCTATGGCACATGGAGGGGTAAATCTCCACCTTATTTTTGGAGATTATCAAGATTTTGCTGGCATAATTATTTTGCTAGTTATCAACTCTACCATCAGTTTCATAGAAGAAAATAATGCTGGTAATGCAGCTGCAGCCCTTATGGCCAGATTGGCCCCAAAAGCAAAGGTACTCCGTGATGGAAAATGGAGTGAAGAAGATGCTTCAGTGTTGGTTCCTGGAGACATAATTAGCATCAAGCTTGGTGATATCATTCCTGCAGATGCACGTCTCCTTGAAGGAGATCCTTTGAAGATTGACCAGTCTGCTCTTACTGGAGAGTCACTTCCTGTCACTAAACATCCCGGAGAAGGAGTATATTCTGGTTCAACTTGCAAGCAAGGAGAAATAGAAGCAGTAGTTATTGCTACTGGAGTTCACACTTTTTTTGGCAAGGCAGCTCATCTTGTGGAAAATACAACACATGTTGGACATTTCCAGAAGGTTCTTACATCTATTGGGAATTTCTGCATTTGTTCAATTGCTATTGGGATGGTTATTGAAATCATTGTGATATATGGGATCCAGAAAAGGGGATATAGGGTTGGTATTGATAACCTCCTTGTGCTCTTAATTGGGGGGATCCCTATTGCAATGCCAACTGTCCTTTCTGTTACAATGGCTATTGGTTCACATAGGTTGTCTCAGCAGGGTGCCATAACAAAGAGAATGACTGCTATTGAAGAAATGGCTGGAATGGATGTGTTATGTAGTGACAAAACAGGCACATTAACTCTTAACAAGCTTACAGTGGACAAGAATATGATTGAGGTTTTTGCCAAAGGTGTTGACAAGGATATGGTTGTACTTATGGCTGCAAGAGCATCAAGGCTAGAGAACCAGGATGCAATTGATGGTGCAATTGTTTCAATGTTGGCAGACCCAAAGGAGGCACGAGCTGGAATAAAAGAAGTTCACTTCCTTCCATTCAATCCAACTGATAAAAGAACTGCACTTACATACATTGAAGCTGCTGGCAAGATGAACAGGGTTAGCAAAGGTGCACCAGAGCAGATTCTCAATCTTTCTAACAACAAATCAGAAATTGCACAGAAGGTTCATGCAATTATAGACCAATTTGCAGAACGTGGACTTCGTTCTCTTGCAGTTGCACGCCAGGAAGTACCTGAGGGGAATAAAGACAGTCCAGGAGGACCCTGGGAATTTGTTGGCCTTCTCCCTCTTTTTGACCCTCCTCGCCATGATAGTGCAGAAACAATCAGAAGAGCTCTTGATCTTGGTGTGAGTGTCAAAATGATTACTGGTGATCAACTTGCAATCGGGAAGGAAACAGGAAGGCGTCTAGGGATGGGAACTAACATGTATCCTTCTTCATCACTGCTTGGTGAAAAAAAAGATGGATTAGGTGCTGTCTCCATTGATGAGCTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCTGAGCACAAGTATGAGATTGTGAAGAGGTTACAAGCTAGGAAGCACATTTGTGGGATGACTGGTGATGGGGTGAATGATGCACCTGCCCTAAAGATAGCTGACATAGGTATTGCAGTAGCAGATTCTACAGATGCTGCAAGAAGTGCTTCTGACATAGTACTAACAGAACCTGGGTTAAGTGTGATCATAAGTGCAGTTTTAACTAGCCGTGCAATTTTCCAGAGAATGAAAAACTACACAATATATGCTGTATCTATCACTATTCGTATTGTGTTGGGTTTCATGTTACTGACCTGCTTTTGGAGATTTAACTTTCCCCCCTTTATGGTTCTAATCATTGCCATTCTCAATGATGGTACCATCATGACAATATCTAAAGACAGGGTTAAGCCTTCTCCAACTCCTGATAGTTGGAAGCTTAGTGAAATTTTTGCAACTGGGGTTGTTCTTGGAAGCTATCTTGCTCTAATGACTGTGATCTTCTTCTTGGTTGTTTATGAAACAAACTTCTTTCCTAACCATTTTCGTGTGAAACACTTCCGCGTCAATACAGATGATCCTGTTACTGATGAAGTGAAAGAAATGTTGGGATCTGCTGTCTATCTTCAAGTCAGCACAATTAGTCAAGCCTTAATTTTTGTTACACGCTCCAGGGGTTGGTCCTACACAGAAAGACCTGGTCTTTTGCTTGTTATTGCCTTCATAATTGCTCAGCTGGTTGCAACTGTTATATCTGCCAAAGTCACATGGAAAACTGCTGGAATTAGAAGTATAGGTTGGGGCTGGACAGGAGTCATATGGTTGTTCAATACTGTAACTTATGTACTTCTGGATCCTTTAAAGTTTGCTGTTCGTTATGCATTAAGTGGAAGGGCTTGGAATCTGGTGGTCAACCAAAGAACTGCATTCATCAACAAAAATGACTTTGGTAGAGAAGCACGTGAGGCTGCATGGGCTGCTGAGCAGAGAACCTTGCATGGCCTCCATTCTGTTGAGTCAAAAGTGATGGCAGAGAAGCACACATTCAGAGAAATAAATACATTGGCAGAAGAAGCTAGGAGGAGAGCAGAGATAGCAAGGTTGAGAGAGCTTTACACTCTGAAAGGAAGAGTGGAATCCTTTGCCAAGCTAAGGGGTTTGGATATTGATAATGTGAACGGGCACTATACTGTCTAA 2895 0.4183 MVERSMELEAISKEAVDLENISLEEVFDNLKCTREGLSSEQVQARLDLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIAMAHGGVNLHLIFGDYQDFAGIIILLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWSEEDASVLVPGDIISIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPGEGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVENTTHVGHFQKVLTSIGNFCICSIAIGMVIEIIVIYGIQKRGYRVGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNMIEVFAKGVDKDMVVLMAARASRLENQDAIDGAIVSMLADPKEARAGIKEVHFLPFNPTDKRTALTYIEAAGKMNRVSKGAPEQILNLSNNKSEIAQKVHAIIDQFAERGLRSLAVARQEVPEGNKDSPGGPWEFVGLLPLFDPPRHDSAETIRRALDLGVSVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGEKKDGLGAVSIDELIENADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKIADIGIAVADSTDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLTCFWRFNFPPFMVLIIAILNDGTIMTISKDRVKPSPTPDSWKLSEIFATGVVLGSYLALMTVIFFLVVYETNFFPNHFRVKHFRVNTDDPVTDEVKEMLGSAVYLQVSTISQALIFVTRSRGWSYTERPGLLLVIAFIIAQLVATVISAKVTWKTAGIRSIGWGWTGVIWLFNTVTYVLLDPLKFAVRYALSGRAWNLVVNQRTAFINKNDFGREAREAAWAAEQRTLHGLHSVESKVMAEKHTFREINTLAEEARRRAEIARLRELYTLKGRVESFAKLRGLDIDNVNGHYTV 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2322g00012 964 SFLD p-type atpase 317 644 IPR044492 -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 616 628 - -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 593 612 - -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Gabi2322g00012 964 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Gabi2322g00012 964 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 861 IPR023298 -
Gabi2322g00012 964 FunFam Plasma membrane ATPase 347 494 - -
Gabi2322g00012 964 FunFam ATPase 4 plasma membrane-type 577 829 - -
Gabi2322g00012 964 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 819 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi2322g00012 964 SFLD Haloacid Dehalogenase 317 644 - -
Gabi2322g00012 964 Gene3D - 347 494 IPR023299 GO:0000166
Gabi2322g00012 964 Pfam haloacid dehalogenase-like hydrolase 331 607 - -
Gabi2322g00012 964 Gene3D - 100 828 - -
Gabi2322g00012 964 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Gabi2322g00012 964 FunFam Plasma membrane ATPase 138 222 - -
Gabi2322g00012 964 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Gabi2322g00012 964 NCBIfam HAD-IC family P-type ATPase 107 542 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 NCBIfam HAD-IC family P-type ATPase 568 673 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 Gene3D - 913 964 - -
Gabi2322g00012 964 Pfam E1-E2 ATPase 136 314 - -
Gabi2322g00012 964 SUPERFAMILY HAD-like 331 640 IPR036412 -
Gabi2322g00012 964 PRINTS H+-transporting ATPase (proton pump) signature 624 649 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 PRINTS H+-transporting ATPase (proton pump) signature 774 795 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 PRINTS H+-transporting ATPase (proton pump) signature 565 581 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 PRINTS H+-transporting ATPase (proton pump) signature 593 609 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2322g00012 964 Gene3D - 332 630 IPR023214 -
Gabi2322g00012 964 Gene3D - 138 222 - -
Gabi2322g00012 964 CDD P-type_ATPase_H 36 855 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi2322g00012 964 FunFam Plasma membrane ATPase 487 641 - -
Gabi2322g00012 964 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Gabi2322g00012 964 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Gabi2322g00012 964 PANTHER CALCIUM-TRANSPORTING ATPASE 19 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2322g00012 Gabi-Chr2322 138869 146991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2322g00012 8 964 Primary Pumps ATPases AT3G60330 77.651 0.0 1511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2322g00012 K01535 - gmx:100794938 1642.48