Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2319g00019 ATGTTAAAGAATGGTTCCGAGTCTAAATTCTGCAACTGGGCAGAAACGATTTATGATAATGTTGACCTTAAAGGCGAACTTGCATACGCATGCTTTTCAAATGACTACTCAGACAATTATGTTGCGATGACATATAACCCATACTATCCACCATATGACTCATACCCCGCATCCTGTTTGGCTAGATATGTGCTGGATGTATCTGGACAGCTCAAACTATTTGTATGGTGGAGTTATTTGGAAACATGGCAAGCCATTAATACGCAAGAACAAACATGTGAGTCTCATAGCGGAAAGAAGAATGCTACTTGGATTGTTAGCCCCAGTGGAAATAAGGACGATAAGAAAATAAAGGCCAAGGAAAGTGGGAAGAAGAAAGCTACTCGGATTATTATAGTAACATCAGCGTGGCTTGCTCTTCTGTTTGTTGGCATTACTGTTCTGCTGAGAATTGCAAAGAGGAAAGACTCCAGCCCTTCATTTAAGACAACAGAAGGAGATACATTGACACAATACAAGCTCAGGGATCTGCGAAGGGCAACTAAAAACTTCACACAGAAAATTGGAAAGGGTGGTTTTAGCACTGTTTACAAAGGTGAATTCCCCGATTCAACTTTTATAGCAGTCAAGAAACTTCAAGATCAATTACGAGAAGAAAAACAACTTAGAGCTGAACTGAACACACTGGGATTGATCCAACACAAATTTCTTGTTCGCCTACTTGGCTTTTGTTTAGAAGATTCAAAAAGATTCATAATCTATGATTACATGCCAAATGGTTCTTTAGAATCTCATCTGTTCCAAAAGGGTTCTAATATATTAGATTGGGAAACAAGATACAGGATTGCTGTTGGTACTGCAAAAGGTTTAGCTTACATACACGAAGAATGTAGAGACTGCATCATACATTGTGACATCAAGCCAGAGAACATTTTGTTAGATGCTGAGTATAATCCACAAGTAGCTGATTTTGGCCTGGCAAAACTTCCTGGCCGGAACTTCAGCCGGGTTCTGACTACTATGAGAGGAACCAGAGGCTATCTTGCTCCAGAATGGTTTTCTGGTGGAGCTGTCACTGCAAAAGTTGATGTATACAGCTATGGGCAGGTTCTTTTTGAGATCATTTCAGGTAGAAGGAACATGGATCTATTAAATGATGAGCTAAACAGCTATTTTCCAGCAATGATTTTGAATGCATTGAACAATGGGGTGGATCTTCTGCCTTTGGTAGATTCCAAATTAGAAGGTGAACTCAATATGGAAGAGCTATGTAGAGCATGCAAGGTTGCTTGTTGGTGCATTCAAGATGATGAGAAAGACAGGCCAAACATGACACAAGTGGTCCAAATTTTGGAAGGACTTGTTGACGTAGGTATACCTCCGATTCCATGGTTTTTCCAGTCCATTGCAGAGGCATCCATAAATGAAAGTGACATAAAGGGAAGCGAGGCATATAGTACTTCGAGTACCCTACCTACAAGTTTTACTTTTCAACCTCCAGTAAGTATTTTTAGAGCTGATTTAAACTGTTGA 1533 0.3986 MLKNGSESKFCNWAETIYDNVDLKGELAYACFSNDYSDNYVAMTYNPYYPPYDSYPASCLARYVLDVSGQLKLFVWWSYLETWQAINTQEQTCESHSGKKNATWIVSPSGNKDDKKIKAKESGKKKATRIIIVTSAWLALLFVGITVLLRIAKRKDSSPSFKTTEGDTLTQYKLRDLRRATKNFTQKIGKGGFSTVYKGEFPDSTFIAVKKLQDQLREEKQLRAELNTLGLIQHKFLVRLLGFCLEDSKRFIIYDYMPNGSLESHLFQKGSNILDWETRYRIAVGTAKGLAYIHEECRDCIIHCDIKPENILLDAEYNPQVADFGLAKLPGRNFSRVLTTMRGTRGYLAPEWFSGGAVTAKVDVYSYGQVLFEIISGRRNMDLLNDELNSYFPAMILNALNNGVDLLPLVDSKLEGELNMEELCRACKVACWCIQDDEKDRPNMTQVVQILEGLVDVGIPPIPWFFQSIAEASINESDIKGSEAYSTSSTLPTSFTFQPPVSIFRADLNC 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2319g00019 510 Gene3D Transferase(Phosphotransferase) domain 1 257 457 - -
Gabi2319g00019 510 CDD STKc_IRAK 188 454 - -
Gabi2319g00019 510 ProSitePatterns Protein kinases ATP-binding region signature. 188 211 IPR017441 GO:0005524
Gabi2319g00019 510 SUPERFAMILY Protein kinase-like (PK-like) 162 452 IPR011009 -
Gabi2319g00019 510 ProSiteProfiles Protein kinase domain profile. 182 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00019 510 PANTHER OS07G0415500 PROTEIN 111 464 - -
Gabi2319g00019 510 Pfam Protein kinase domain 185 449 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00019 510 SMART serkin_6 182 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00019 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 301 313 IPR008271 GO:0004672|GO:0006468
Gabi2319g00019 510 FunFam Serine/threonine-protein kinase 257 459 - -
Gabi2319g00019 510 Gene3D Phosphorylase Kinase; domain 1 146 256 - -
Gabi2319g00019 510 FunFam serine/threonine-protein kinase PBS1-like 151 256 - -
Gabi2319g00019 510 Coils Coil 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2319g00019 Gabi-Chr2319 300777 302309 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2319g00019 160 461 Receptor kinase-like Gene Family AT5G20050 42.415 2.22e-76 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi2319g00019 Pkinase 8.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2319g00019 - - ahf:112737678 594.734