Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2319g00017 ATGGAGCCACGGCCGTTCCATTTCAATCATCTTATTTTTCTCTTTTTCATGTCATTCCAGTTACAGCCATCCATTGAATCTGATAGCATCATCCCGGGGCAGACTCTATCAGGGATCAACACTCTAACATCACAAGGTCAAGTATTTGAAATGGGTTTCTTTGCACCACCAGGTAACTCTCATGACTATTACATAGGGATATGGTACAAAGGACTTCCCATGCCACAAAAAACAGTGGTATGGGTAGCCAACAGGGACTCTCCTGTATCTGATCCATACTCTTCATGGTTAGAACTTGGTGAAGATGGTCATCTAGTGGTACACAACTCTTCTGGTCTTGCAGTATGGTCAACAAATTCAAACTCAAGTGCTCCTCCATCAAATTCAACTGTTGGTACCCTTGGTGACGATGGAAACTTCATAATAAGAGAAAGATCAAATCCCTTTTTGGCCAAGGAAGAGAGAAAGATATGGCAGAGCTTTGACCATCCAACAGATACTTGGCTTCCTGGTGCGAAGTTTGGATATGATAATGAGACCGGCCAAAAAACAATACTAAATTCTTGGCAAGATACAAGCAGCCCATCAACGGGCCTTTTATCTCTTGAGTTAATTGAAGTTCATCCTTATTTGTCAGAGGTTCAAATGTCGTTGAAGAATGGTTCTGAGGAGCATGTATTCTGTATATATGAGTCTAATTTCCGGTCAGGTGATGTTGATGTTAATATTGATTTTCAACTTGCCTATGGATGCTTTTCAAAACACTATTTAGATAGTTATGTTTTGATGACATATTCCTCATACCCATCATCTTGTCTCGCTAGATATGTGCTGGATGTATCTGGACAGATCAATCTATTTGTATGGTGGAGTTATATGGAAACATGGCATTCCATTGACATGCAACCACAAACATTTAACTGTCACAGTGGAAATAAGGTGAATAAAAGAATAAAGGACAAGGAAAGTGGAAAGAAGAATGCTACTTGGATTGTTATAGTAACATTAGCATGGCTTGCTCTTCTGTTTGTTGGCATTATTGTTCTGCTGAGAATTGTGCAGAGGAAAGACTCTGACACTTCATTTGAGGCAAGGGGAGGAGATACATTGACCCAATACAAGCTCAGAGATTTGCGAAAGGCAACTAGAAACTTCACACAGAAAATTGGGAAGGGTGGTTTTAGCATTGTTTACAAAGGTGAATTCCCCGATTCAACTTTTATAGCAGTCAAGGCACTTCAAGGTCAATTGCGAGAAGAAAAACAGCTTAGAGCTGAACTGAACACACTGGGATTGATCCAACACAAAAATCTTGTTCGCCTACTTGGCTTTTGTTTAGAAGATTCAAACAGATTCATAGTCTATGACTGTATGCCAAACGGTTCTTTAGAATCTCATCTATTCCAAGAGGGCTCTAATATATTAGACTGGGAAACAAGATATAGGATTGCTGTTGGTACTGCCAAAGGTTTAGCCTACATACACGAAGAATGTAGAGACTGCATCATACATTGTGACATCAAGCCAGAGAACATTTTGTTAGATGCTGAGTATAATCCAAAAGTAGCTGATTTTGGCCTGGCAAAGCTTCTTGGCCGGAACTTCAGCCGGGTTCTGACTACCATAAGAGGAACTAGAGGCTATCTTGCACCAGAGTGGTTTTCTGGTGGAGCTGTCACTGCAAAAGTTGATGTGTACAGCTATGGCCAGGTTCTTTTTGAGATCATTTCAGGTAGAAGGAACATGGATCTATTAAATAATGACCTAAACAGCTATTTTCCAGCAATGGTTTTGAATGCATTGAACAATGGGGCAGAACTTCTGACTTTGGTAGATTCCAAATTAGAAGGTGAACTCAATGTTGAAGAGCTGACTAGAGCATGCAAGGTAGCTTGTTGGTGCATTCAAGATCTTGAAAAAGATAGACCAACCATGAGTCAGGTAGTTCAAATTCTAGAAGGAATTCTTGATCTAGGTATTCCTCCAATTCCACGGTTTTTCCAGTCCATTGCAGAAGCTTGA 2022 0.4021 MEPRPFHFNHLIFLFFMSFQLQPSIESDSIIPGQTLSGINTLTSQGQVFEMGFFAPPGNSHDYYIGIWYKGLPMPQKTVVWVANRDSPVSDPYSSWLELGEDGHLVVHNSSGLAVWSTNSNSSAPPSNSTVGTLGDDGNFIIRERSNPFLAKEERKIWQSFDHPTDTWLPGAKFGYDNETGQKTILNSWQDTSSPSTGLLSLELIEVHPYLSEVQMSLKNGSEEHVFCIYESNFRSGDVDVNIDFQLAYGCFSKHYLDSYVLMTYSSYPSSCLARYVLDVSGQINLFVWWSYMETWHSIDMQPQTFNCHSGNKVNKRIKDKESGKKNATWIVIVTLAWLALLFVGIIVLLRIVQRKDSDTSFEARGGDTLTQYKLRDLRKATRNFTQKIGKGGFSIVYKGEFPDSTFIAVKALQGQLREEKQLRAELNTLGLIQHKNLVRLLGFCLEDSNRFIVYDCMPNGSLESHLFQEGSNILDWETRYRIAVGTAKGLAYIHEECRDCIIHCDIKPENILLDAEYNPKVADFGLAKLLGRNFSRVLTTIRGTRGYLAPEWFSGGAVTAKVDVYSYGQVLFEIISGRRNMDLLNNDLNSYFPAMVLNALNNGAELLTLVDSKLEGELNVEELTRACKVACWCIQDLEKDRPTMSQVVQILEGILDLGIPPIPRFFQSIAEA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2319g00017 673 CDD B_lectin 34 164 IPR001480 -
Gabi2319g00017 673 ProSiteProfiles Bulb-type lectin domain profile. 27 155 IPR001480 -
Gabi2319g00017 673 CDD STKc_IRAK 389 655 - -
Gabi2319g00017 673 Coils Coil 410 430 - -
Gabi2319g00017 673 Pfam D-mannose binding lectin 78 190 IPR001480 -
Gabi2319g00017 673 SMART blect_4 33 164 IPR001480 -
Gabi2319g00017 673 PANTHER OS07G0415500 PROTEIN 11 296 - -
Gabi2319g00017 673 ProSiteProfiles Protein kinase domain profile. 383 656 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00017 673 Pfam Protein kinase domain 386 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00017 673 Gene3D Transferase(Phosphotransferase) domain 1 458 658 - -
Gabi2319g00017 673 SMART serkin_6 383 651 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2319g00017 673 SUPERFAMILY Protein kinase-like (PK-like) 369 653 IPR011009 -
Gabi2319g00017 673 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 191 IPR036426 -
Gabi2319g00017 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Gabi2319g00017 673 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
Gabi2319g00017 673 Gene3D - 24 161 IPR036426 -
Gabi2319g00017 673 FunFam Serine/threonine-protein kinase 458 660 - -
Gabi2319g00017 673 Gene3D Phosphorylase Kinase; domain 1 350 456 - -
Gabi2319g00017 673 FunFam serine/threonine-protein kinase PBS1-like 352 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2319g00017 Gabi-Chr2319 293317 297351 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2319g00017 359 662 Receptor kinase-like Gene Family AT5G20050 42.236 1.63e-73 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi2319g00017 Pkinase 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2319g00017 - - ahf:112737678 786.949