Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2319g00007 ATGTCACTGCATGCTCTGAAGGAAAGTCTGAGACCTTGCACAACCCAACAACCACAACGACAACCACCCTCGTCTTCTTCATCTTCATCTATTACCCAAACACACTCCAATTATTCAATACTCCGTGATTGCGATCCCCAATTCCCAATCCCTAGGAAACCACCCAAATCCTCTCTTTCACACCAGCTTCGCCGCCTTCAAGACCCGCCGCTTCGGCCCCACAATTCCCCAAAACGACAACGGGAATCCACAAGCGAAGAAGAAGAAGAAGAAAAAGAAGAGCCAGAGATAAAGAGAGCAAAATTGGGTATAGCCAAATTGTCGCAGTTTCAATTTGATGATACTGGACCCTTTGACCCTTTGATCTTGTCCTCAGATGGAGAACTTCCCGTGGTTCAGGTCCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAAAGAGTGGGAGTGAAGTTTCTGTATGGTTTGTACAAGAACAACCATGGAGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAGCAATAGCATTTCTTGCTGCTGTCTTTGGTAAAGAAAGAGAGTCTATGCTAAGTGAAAACCGGGTAGAGAAGAGAGACCCAGTATTGATAATTTGCCCAACTTCTGTTATTCACAACTGGGAGAGCGAATTCTCTAAGTGGGCTAACTTCAGTGTTTCCATTTATCATGGTGCCAACCGGGATCTGATATATGATAAATTGGAAGCAAGTGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGCAGTTCCTTGTCAGATATCAACTGGAACATTGTGATTGTTGATGAGGCTCATAGACTTAAGAATGATAAATCAAAACTCTATAAAGCCTGTTTAGAAATCAAAACCTTGAGACGCTATGGTCTTACTGGGACCGTAATGCAAAATAAGATCATGGAATTGTTCAATCTCTTTGAATGGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCCCTTAAGCAGGGTCAGAGGTCAACGGCTCCTGATAGGTTTGTACAAATTGCTAATAAGAGAAAACAACACCTTGTTGCAGTTCTTCATAAATATATGTTGAGAAGGACTAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGCGCAATGAGTGATTTGCAAAAGCGTGTTTACAGGAGAATGTTACAGCTTCCTGACATTCAATGCCTTATAAATAAGAACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAAGTTGAATGTTGCAAGAGGATTGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGCGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCAGAGTTTGCTTCTGCTGTCTTTGGCCCTGATATTGATTTCGTGGGCGGGAACATGCAGAATCAGAGCTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTTTCCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACCTACAGGCTCAGGACAGGTCTTTTCGTTTTGGACAGAAGCGGCATGTTGTTGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAAGAACTTGTTTATTCACGTCAGGTGTACAAGCAGCAGCTCTCGAACATTGCTGTCTCTGGAAAGATAGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAGGAATTCCAAGGAGAGCTTTTTGGAATTAGCAATTTATTTCGAGATTTATCTGATAAGCTATTTACCAGTGAGATCATTGAATTGCATGATATGAGTAAGGAACATAGGCAAAAAACAGAACAGGAAAAATTAAATCTGTCAGAAGAAACAGGTTCATTAGTATCAGACTCTGAAACTGGGTTATGTACTGAATCTGTGAGGGCTGCAATCAGTAAACCAGATCTTGAAGACCTTGGCATTGTGTATGCTCATCGCAATGAAGACATTGTCAACTACAGATCAGGGATTCAAGGGAAAATATATACCAGCATCCCTTCAAGTGATAGCCCAAGCAAGCCAACCATGTCTTTAGTCCACCAAAGTAAGAAACCAGATTGTGTACTTAAAAAGCAGAAAGTTCCTTTGATTGATGAAAGGAAGAGAACCCAATATAGCCTCCTTGCTCAGTCTATGGGCATGGGAGAACTTGCATTTAGCCAATGGTTACTATCAGCGACTCCACGAGAAAGGGAGAAAGTGCTTCTAGACTACAAGAAGAAAAAGAAGATACCTAATGGTTGA 2643 0.423 MSLHALKESLRPCTTQQPQRQPPSSSSSSSITQTHSNYSILRDCDPQFPIPRKPPKSSLSHQLRRLQDPPLRPHNSPKRQRESTSEEEEEEKEEPEIKRAKLGIAKLSQFQFDDTGPFDPLILSSDGELPVVQVPASINCRLLEHQRVGVKFLYGLYKNNHGGILGDDMGLGKTIQAIAFLAAVFGKERESMLSENRVEKRDPVLIICPTSVIHNWESEFSKWANFSVSIYHGANRDLIYDKLEASGVEILITSFDTYRIHGSSLSDINWNIVIVDEAHRLKNDKSKLYKACLEIKTLRRYGLTGTVMQNKIMELFNLFEWVAPGSLGTREHFREFYDEPLKQGQRSTAPDRFVQIANKRKQHLVAVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDIQCLINKNLPCSCGSPLTQVECCKRIVPDGVIWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFASAVFGPDIDFVGGNMQNQSFMGLSDVKHCGKMRALEKLFSSWISHGDKVLLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVVVFRLLAAGSLEELVYSRQVYKQQLSNIAVSGKIEKRYFEGVQDCKEFQGELFGISNLFRDLSDKLFTSEIIELHDMSKEHRQKTEQEKLNLSEETGSLVSDSETGLCTESVRAAISKPDLEDLGIVYAHRNEDIVNYRSGIQGKIYTSIPSSDSPSKPTMSLVHQSKKPDCVLKKQKVPLIDERKRTQYSLLAQSMGMGELAFSQWLLSATPREREKVLLDYKKKKKIPNG 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2319g00007 880 CDD SF2_C_SNF 525 654 - -
Gabi2319g00007 880 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 325 IPR014001 -
Gabi2319g00007 880 Gene3D - 387 744 IPR027417 -
Gabi2319g00007 880 PANTHER SNF2/RAD54 FAMILY MEMBER 43 813 - -
Gabi2319g00007 880 Pfam Helicase conserved C-terminal domain 531 643 IPR001650 -
Gabi2319g00007 880 Pfam SNF2-related domain 159 415 IPR000330 GO:0005524|GO:0140658
Gabi2319g00007 880 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 687 IPR001650 -
Gabi2319g00007 880 MobiDBLite consensus disorder prediction 1 97 - -
Gabi2319g00007 880 MobiDBLite consensus disorder prediction 9 41 - -
Gabi2319g00007 880 SMART helicmild6 560 643 IPR001650 -
Gabi2319g00007 880 MobiDBLite consensus disorder prediction 67 86 - -
Gabi2319g00007 880 FunFam Switch 2 124 374 - -
Gabi2319g00007 880 Gene3D - 122 374 IPR038718 -
Gabi2319g00007 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 375 IPR027417 -
Gabi2319g00007 880 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 703 IPR027417 -
Gabi2319g00007 880 SMART ultradead3 138 333 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2319g00007 Gabi-Chr2319 140527 146664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2319g00007 162 673 RAD5 or RAD16-like Gene Family AT1G02670 26.381 2.86e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2319g00007 SNF2_N 2.8e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2319g00007 K20098 - gmx:100781003 1454.5