Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2318g00003 ATGGACTTGGACATAGACATGGACATCCCCCTCCCCGAAGAGCTTGAATTACTGGAATCAGATTCTCATCTCCACGAACAAGATGAACACCAAGATCTAGATCAAGACCAAGACGATTACCACCCAGACGTCGATCAAACTGAACCCCAACCCGAACAACCTCCAGATCTCGCGTTTCCTTTGGAACCCGAAACCAACGGTCTCAAGCGTTCGCGTTCGAGTTCGGATTCGGATTTGGATTCTCCCGATGAGGAGAAAAGGTTTAGGGTTAGGGTTGAGGATTCCTCCGCCGCTGATGAGGACTGGCTACGTTACTCGCCTCCTCCTCCTCCTCCGGTGGAAGAAGTGAGGTCTGTGAAGGAAACGATGTTGTCAAGGTACGCGTCGAAGATTGACGGGGAGTGTATGCCGGTCACCGCGCCCAGTGGTGATAGGGTTTATGTCAAGCTGAATCGGTTCCAAGGAGAGGAGCGTGTAAGGAAGCTCGATTGTAAAGGATATTCTGCTGATCTTAGTTTAGAACCGATTAGTATTCTATTTGAAAAATTGGAGCAAGAGGCTTTGGCTAAGGCCTTGGAAGCTAGTTCTGAATGCCAAAGTGTTGTAGATGTTCCCGAAACACGATTGGTTAATGGGCAACTTTGGGTAGATAAATATGCTCCGAAATCATTTACTGAGCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTGAAACAATGGGATTCTGTTGTGTTTGGATCTGAAATTCGAAGGACATCAGATGATGTTTTTTCTGCTTTGAAACGACATTCTTCTATTGCCCAAAATCAGAAGCCTTTTTATTCAAAGTTTCCAAGGATAAACAGAGGACCCAAATGGAGTAGTGGGAGGTATATAAATTCGAAAAGTATGGATGAGAGTGGTAATTCAAAGAGTGTTCAGGATACATGGAATATGAAGTCAAGGAATACTGGTCCACCAGAAGAGAAGATCCTTCTTCTCTGTGGACCACCAGGGCTTGGAAAGACAACACTTGCCCATGTAGCAGCTAGGCATTGTGGATATCATGTGGTGGAGGTTAATGCCAGTAATGATCGTTCTACATCAACAATTGAAGCCAAAATTCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAACCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGTGATGGCAAGGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCGGAAAAGAAGCCTGATGCAGGGAAGCAAAGTTTGGACAAGGGACAGTTGGGAAGGAAGTCATCAAAGAAGGGGCAGAAAACAGCGTCACTGTTAAGACCCGTGATTTGTATATGTAATGACCTATATGCACCTGCCTTAAGACCATTACGTCAAGTAGCCAAGGTTCATATATTTGTTCAACCAACAGTTTGTCGTGTGGTTAACAGGCTGAAATATATATGTAACAAGGAGGGTATGAAAGCCAGTGCCATTGCACTCACTGCTCTAGCAGAATATACAGAATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCCAAGAAGAAAGAAACCCTCAATGTGTTTGATATTGCCTCTCAAGTAGTTGGCCAGAAGGACATGTCAAAGAATCTTCTAGACATCTGGAAAGAACTTTTCCAAAGGAAAAGAACGAAGATGGAAAGAAAATCTCATGGAAGCAAGTCCTTTGAATTTGACTCCTTGTACTCCCTTATATCGAATCGTGGTGATTGTGACTCGATTCTGGATGGAATTCATGAAAATATTTTGCAGCTCAATTATCATGACCCACTGATGCATAAAACTGCCAAGTGCTTCGATAGTCTTGGAGTTTACGATCTAATGCATCAATATATAATGCGTACACAGAAAATGCCTCTTCGTGTTTATTTCCCCTCCATAGCAATTACTGTACATCATATAGTAGCTCAAGTTCAGAAGCCGAATATTGAATGGCCAAAGTCATATCAAAGGTATCGGACAATGATGATAGAAAAGATGGACATTTTGAATACTTGGCGTTACAAAATCCCACCGCATATTGCTAGGCACTTATCAGCTAATTCCTTTGTTGAAGATTTAATTTCTCCTTTGTTACACATTCTCTCCCCACCAACTATAAGACCGCCTGCAGCAAGTATTTCTACATGGGATGATGTGTCTCAGAAGTTCTTTGCTGAGTTATTCTCGATGGAGAGGTACAACCAGATGGTGAATGATATCACCAATTTCACCCAGCTACAAGGTGAAACTATGTGTGGAGCATGGAACAGATTCAAGGATTTAATGAGGAGGTGTCTTCAATATAACCTGACTACTGGCAATCAGGTGGCAAACCTGACCTCAAGACTTGATAAGATGCAGCTTGCTGGTGTTCAGACAAAAGCTGCTGCTGTGAATGGCATCTGGTATAATCAAAGACCCCAACAACAAAATGTTCAAAGAGGTCAGAATTTTGCTTCTGGAGGTAATAATTATCAACGGAAAATCCAAGGCACGGGTCTTGATTACAATTCAAACAACTACTTACGGCCTCCACCAGTCCAAGCTAAGGAGCCTTCTGATTTGGAGAGGAAGAAAAATGTAGCGGTTGAGGTTCTTGAAAAAGCAGAGGATTACAAAGAAGATGATACCTCAAAAGTGGAACTGAAGGCGCTTCCTCAAACTCTGAAAGATGATGTCAAAGAGGTGAAGAGGTCTCAAAGGAGGCGTAATCCTACAAAGTAG 2757 0.4276 MDLDIDMDIPLPEELELLESDSHLHEQDEHQDLDQDQDDYHPDVDQTEPQPEQPPDLAFPLEPETNGLKRSRSSSDSDLDSPDEEKRFRVRVEDSSAADEDWLRYSPPPPPPVEEVRSVKETMLSRYASKIDGECMPVTAPSGDRVYVKLNRFQGEERVRKLDCKGYSADLSLEPISILFEKLEQEALAKALEASSECQSVVDVPETRLVNGQLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSVVFGSEIRRTSDDVFSALKRHSSIAQNQKPFYSKFPRINRGPKWSSGRYINSKSMDESGNSKSVQDTWNMKSRNTGPPEEKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASNDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAEKKPDAGKQSLDKGQLGRKSSKKGQKTASLLRPVICICNDLYAPALRPLRQVAKVHIFVQPTVCRVVNRLKYICNKEGMKASAIALTALAEYTECDIRSCLNTLQFLSKKKETLNVFDIASQVVGQKDMSKNLLDIWKELFQRKRTKMERKSHGSKSFEFDSLYSLISNRGDCDSILDGIHENILQLNYHDPLMHKTAKCFDSLGVYDLMHQYIMRTQKMPLRVYFPSIAITVHHIVAQVQKPNIEWPKSYQRYRTMMIEKMDILNTWRYKIPPHIARHLSANSFVEDLISPLLHILSPPTIRPPAASISTWDDVSQKFFAELFSMERYNQMVNDITNFTQLQGETMCGAWNRFKDLMRRCLQYNLTTGNQVANLTSRLDKMQLAGVQTKAAAVNGIWYNQRPQQQNVQRGQNFASGGNNYQRKIQGTGLDYNSNNYLRPPPVQAKEPSDLERKKNVAVEVLEKAEDYKEDDTSKVELKALPQTLKDDVKEVKRSQRRRNPTK 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2318g00003 918 Gene3D - 476 546 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 823 855 - -
Gabi2318g00003 918 Gene3D - 212 474 IPR027417 -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 1 15 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 823 870 - -
Gabi2318g00003 918 CDD HLD_clamp_RFC 480 534 - -
Gabi2318g00003 918 CDD AAA 324 414 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 1 93 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 16 46 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 296 319 - -
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 897 918 - -
Gabi2318g00003 918 FunFam Chromosome transmission fidelity protein 18 476 543 - -
Gabi2318g00003 918 Pfam Retrotransposon gag protein 709 783 IPR005162 -
Gabi2318g00003 918 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 6 723 - -
Gabi2318g00003 918 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 533 IPR027417 -
Gabi2318g00003 918 SMART AAA_5 325 479 IPR003593 GO:0016887
Gabi2318g00003 918 Pfam ATPase family associated with various cellular activities (AAA) 329 440 IPR003959 GO:0005524|GO:0016887
Gabi2318g00003 918 MobiDBLite consensus disorder prediction 69 93 - -
Gabi2318g00003 918 Coils Coil 866 886 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2318g00003 Gabi-Chr2318 216181 259323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2318g00003 326 539 Core DNA Replication Machinery Family AT5G22010 28.821 3.40e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2318g00003 K11269 - gmx:100785041 1046.57