LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2318g00002	ATGTCTCAGTTACCACAGCAAGAGAATAATGGACAGCCCTTGGATGCATGCGCCGGGGGTAGTTACATTAATGCCGATGGAGTGTTGACTCACTGGACTCGGGAGCAGGACACTGCCTTTGAGGACGCTCTTGTCATCTTCCCGGAAGACCTCCCTGAGCCGGAGCGCTGGGAGAAACTCGCCGCTCTTGTCCCCGGAAAATCGCCGGCGGAGGTCAGGGAACATTATCGCGTGTTGGTCCATGACTTGATGGAGATTGAGGCCGGTCGAGTCCCGTTACCTCTTTACTCCGATGACTTGTCGCCGGTGCAGGTGAAGAACAACAGTGGTACCCATAGAAAGAAAGGGGTGGCATGGACTGAAGAGGAACACAAGTTATTTCTGTATGGGCTGCAGACATTTGGCAGGGGAGATTGGAGAAGCATTGCTAGATATGTAGTTAAGACAAGAAATCCAACACAAGTTGCTAGTCATGCCCAAAAATACTTTCTTCGACTTGCTCAAGGTGCCACAAAGAAGGAAAGGAAAAGAACAAGCATCCATGACATAACCTTAAATGCTGAAAACAACAATATCCCTCTCCCCATTCATCAGCAGAATTGGCTTCCCCCTCCTCCTGTTGTTACAATTCAGCAGCAGGTGCAAGAAAGGCTCAGCGTGCACAAATTGTTGGAAGCAAATGTAACGCAGCAAGCACTAGAATTGCAGAAAGCACAAGATATGAAGCAGCGGCACCCACCAAACAATATGCCTCATCAAATGGGTGGATATGACCATGTTAACAAAAGCTCTTAG	795	0.4868	MSQLPQQENNGQPLDACAGGSYINADGVLTHWTREQDTAFEDALVIFPEDLPEPERWEKLAALVPGKSPAEVREHYRVLVHDLMEIEAGRVPLPLYSDDLSPVQVKNNSGTHRKKGVAWTEEEHKLFLYGLQTFGRGDWRSIARYVVKTRNPTQVASHAQKYFLRLAQGATKKERKRTSIHDITLNAENNNIPLPIHQQNWLPPPPVVTIQQQVQERLSVHKLLEANVTQQALELQKAQDMKQRHPPNNMPHQMGGYDHVNKSS	264

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2318g00002	264	SUPERFAMILY	Homeodomain-like	31	87	IPR009057	-
	Gabi2318g00002	264	MobiDBLite	consensus disorder prediction	235	264	-	-
	Gabi2318g00002	264	ProSiteProfiles	Myb-like domain profile.	32	80	IPR001005	-
	Gabi2318g00002	264	FunFam	transcription factor MYB1R1	117	168	-	-
	Gabi2318g00002	264	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	114	165	IPR006447	GO:0003677
	Gabi2318g00002	264	SUPERFAMILY	Homeodomain-like	111	167	IPR009057	-
	Gabi2318g00002	264	CDD	SANT	32	80	IPR001005	-
	Gabi2318g00002	264	CDD	SANT	118	163	IPR001005	-
	Gabi2318g00002	264	ProSiteProfiles	SANT domain profile.	119	167	IPR017884	-
	Gabi2318g00002	264	Gene3D	-	29	93	-	-
	Gabi2318g00002	264	ProSiteProfiles	Myb-like domain profile.	111	163	IPR001005	-
	Gabi2318g00002	264	PANTHER	DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	30	246	IPR043363	-
	Gabi2318g00002	264	FunFam	Transcription factor SRM1	25	93	-	-
	Gabi2318g00002	264	Gene3D	-	117	168	-	-
	Gabi2318g00002	264	SMART	sant	115	165	IPR001005	-
	Gabi2318g00002	264	SMART	sant	28	82	IPR001005	-
	Gabi2318g00002	264	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	111	167	IPR017930	-
	Gabi2318g00002	264	Pfam	Myb-like DNA-binding domain	118	163	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2318g00002	Gabi-Chr2318	178835	180491	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Gabi2318g00002		Myb_DNA-binding	2.8e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2318g00002	-		-	mcha:111006345	210.69