Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2318g00001 ATGGTATACCAAGGTGGTCCTTTTACTCAACAAGAAAGCTTCTTTAAGCCTCAAAACCCAATGAGCAAGGAGAACACTGCCTTTGAGGACGCTCTTGTCATCTTCCCGGAAGACATCCCTGAGCCGGAGCGCTGGGAGAAAGTCGCCGCTCTTGTCCCCAGAAAATCGCCGGCTGAGGTCCGAGAACATTATCGCGTGTTGGTCCATGACTTGATGGAGATTGAGGCCGGTCGAGTCTCATTACTGGTTTACTCCGATGACATACCGCTTTACTCTGATGCATGCGACGGGGGTAGTTACATTAATGCTGATGGAGTGTTGACTCACTGGACTCTGGAGCAGAACACTGCCTTTGAGGACGCTCTTGTCATCTTCCCGGAAGACCTCCCGGAGCCGGAGCGCTGGGAGAAAGTCGCCGCTCTTGTCCCCGGAAAATCGCCGGCGGAGGTCAGGGAACATTATCGCGTGTTGGTCCATGACTTGATGGAGATTGAGGCCGGTCGAGTCCCATTACCGCTTTACTCTGATGACTTGCCGCCGGTGCAGGTGAAGAACAACAGTGGTACCCATAGAAAGAAAGGGGTGGCATGGACTGAAGAGGAACACAAGTGA 612 0.531 MVYQGGPFTQQESFFKPQNPMSKENTAFEDALVIFPEDIPEPERWEKVAALVPRKSPAEVREHYRVLVHDLMEIEAGRVSLLVYSDDIPLYSDACDGGSYINADGVLTHWTLEQNTAFEDALVIFPEDLPEPERWEKVAALVPGKSPAEVREHYRVLVHDLMEIEAGRVPLPLYSDDLPPVQVKNNSGTHRKKGVAWTEEEHK 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2318g00001 203 ProSiteProfiles Myb-like domain profile. 110 158 IPR001005 -
Gabi2318g00001 203 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 108 203 IPR043363 -
Gabi2318g00001 203 FunFam Transcription factor SRM1 20 81 - -
Gabi2318g00001 203 SUPERFAMILY Homeodomain-like 23 75 IPR009057 -
Gabi2318g00001 203 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2318g00001 203 FunFam Transcription factor SRM1 103 171 - -
Gabi2318g00001 203 CDD SANT 24 68 IPR001005 -
Gabi2318g00001 203 CDD SANT 110 158 IPR001005 -
Gabi2318g00001 203 MobiDBLite consensus disorder prediction 182 203 - -
Gabi2318g00001 203 SUPERFAMILY Homeodomain-like 109 165 IPR009057 -
Gabi2318g00001 203 SMART sant 17 70 IPR001005 -
Gabi2318g00001 203 SMART sant 106 160 IPR001005 -
Gabi2318g00001 203 Gene3D - 107 171 - -
Gabi2318g00001 203 Gene3D - 21 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2318g00001 Gabi-Chr2318 142984 149649 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2318g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2318g00001 - - mcha:111006345 108.997