Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2315g00029 CAAGAAGATGCCGAAGGAGCCACCTGCATCCACCACATAGATGCTGAGGCAGCCAAAACTTGGATATACCCAGTTAATGTTCCTCTCCGTGACTATCAATTTGCTATCACCCAGTCCGCACTCTTTTCGAACACATTGGTGGCCTTGCCAACAGGACTTGGCAAAACACTCATTGCCGCGGTTGTTATGTATAATTATTTCAGATGGTTTCCTCAAGGTAAAATAGTCTTTGCTGCCCCTTCTCGACCACTTGTCATGCAGCAGATAGAAGCATGCCATAATATTGTGGGAATACCTCAAGAATGGACGGTTGATATGACCGGTCAGCTAAGTCCTCCCAAAAGAGCTCGTTTTTGGAAAACAAAGCGAGTTTTCTTTGTCACTCCACAAGTATTGGAAAAAGATATTCATTCTGGTACGTGTTTGGTGAAATACTTGGTATGTTTGGTAATTGATGAAGCTCACAGGGCAATGGGAAATTACGCTTATTGTGAAGCAGTTCGTCAGTTAATGGCTGTACCGGTACAACTGAGAATATTAGCGTTAACTGCAACGCCGGGATCAAAGCAGCAGACGGTCCAGGATGTTATTGATAATCTGCATATCTCCAAGCTCGAATATCGCAGTGAAACTGACCATGACGTTATCTCATATGTTCACAATAGGAAGGTAGAGGTGATACAGGTTGCAATGGGCCAAGATGCTGCAGAAATAAACAATAAGTTTTTGGAAGTAATACGCCCTGTAGTAGCCAGGCTTACAAAAATTGGGGTCATTCAGAATAGAGATTATCGCACTTTGAGCCCTTGTGTATTACTTGAAATGAGGGAAAAGTTTCGTCAGGGGCCTAGGGAAGATCTTTCTCATGTCAACTATGGAGATGTTGAAGGGTATTTTGGAGTTCTTATTACTCTTTATTACATCCATAAGCTACTTTCAAGTCATGGAATAAGGCCAGCATATGAGATGCTCGAAAGAAAATTGAAGCAAGGGTTTTTTGCAAAATTTATGAGTAAAAATGAAGTTATTCTAAAAGCAAGGCAACTAATGCAGCAAAGCTTGTCTCATGGAGCATCGAGTCCCAAGTTGTCCAAAATGCTAGAACTATTACTGGAGCATTTCAAAACCAATGATCCGCAAAACTCCAGGGTAATTATTTTCTCCAACTATAGAGAAAGTGTCAGGGACATTATGGATGCACTTGGGGGCACTGGGGAACTAGTCAGAGCTACCCAGTTTATTGGTCAAAGTACAGGAAAAGCAATGAAGGGTCAGTCCCAAAAAGTTCAACAGGCTGTGCTGAAGAAATTTCGGTCTGGTGCCTACAATGTCATCGTTGCTACATCAATTGGTGAAGAAGGTCTTGATATCATGGAAGTTGATCTTGTCATATCTTTTGATGCTAATATTTCACCACTTAGAATGATTCAGCGAATGGGGAGAACTGGAAGAAAGCATGATGGACGAGTTGTAGTTTTAGCTTGTGAAGGGACAGAGTTGAAAGGCTACTTGCGAAAACAGGCTAAGAGCAAGACTATAAGTAAACACATGCGAAATGGGGGCGTAAATAGCTTCAGCTTTCATCCTAGTCCAAGGATGATTCCCCACATCCTTAAACCAGAAGTTCAATATGTTGAGCTGTCAATTGAGAAATATATTCCTCGTGAAAAGAATGTGAAAGACGACCATCTTCACATTTCTGCATCCAAGGAGAAACTCACTGATGCTGAAAATGATTTACTGGAAACATATTTTCACCCTACTGGGGAAAATAAATGTAGATTATCTCTTATTGCCTTTCCCCACTTTCAGACCTTTCCTTCTAGAGTGCATAAAGTGAAACATTCCTTTGGAACATTGATGCTTATAGATATGATGCAGCGTTTGAAAGGACTAGTATCATTTCCAGGAGATAGCAAAACTTCTCTTCAGGAAGATCTGTGTTTAGGAAATAGTAATCCAGTTGCAATTACCGAGCTGGATGGGGGTATAAAAGATAATGAATCATGCTCTAGGCATACAAGGGGAAGGAATGTAGTCTATGTAAATTGTCTGGAGCTGGATTCCTGTCATTTGGAGATTCAAACCAAAGACTCTGTTGATCCAACTCTCCAGGATAGTACTCTCTGTGACTTGGGTAAGCATCTCGAGGAAACATGCGAGGGTGATGAGACAATTCCTGAGACTCCAATTGCTAAGAAAAGTGTGTCAAATGAGGGAGATAATGCTGGTGAAACGATCAATCTTGTGGAGATCAAGACTTCTTTGTTGGTTGAAGATGCATGCTTGGATGGCTTAAGAGATGAACTTAGTCCTCGTTTAACTAATTTTATTAGAAGTGGTGTTGTTCCAGAGTCTCCCATTGATGAAAGAGGGCAATCAAGAAACAACTTTGTCATTCGAGACTGTATTTCACCTGTTCATCTTCTCGAACAAGGCAATGTTAGTTCTTTATGTTTTAGGGAAACTGAAAAGGTCATCATTGATAGTGGGCCTGGTAAGAATGCCTCTACTTCTCCTGTTGTCAATGAAACTCAAACCCCTTTACTTGAGCTGAAGAAGTATGCAATTAGAAGAGGACGTGTCTTCCTTTCCCCAACTGACGAAGACCATACACATATCGCTGACCCATGCTTCAGTGGAGAATCACATTTAGGCTGTGGTGAAATGTCTTTAAGCATTAAACCTGCACGCAAATTTAAAAGGTTGCGGAAAGCTGATGATATTGACAGTAATATGAATCAGAAAAACAATAATTGTTTTGCTTCAACAGCAAACCTTTTGAAATCATCTTCTACCTCCAATCCCACACGATGTAAGCATGGCCAAGGTAAAAGGACACCAACACATACTGTGAGAGACTTCATTGAGGAGGAAGCTGAGGTATCTTCAGATGCCTACATATCCAATGACGAAGATGACGAGGATGGCAATTCAGTTGACAGTTTCATAGATGACAGGACCAACCCTTCAGCGGCCAGTCAGGCTGAAGCTAGTAGAATGGACATGATGGCAATTTACAGGCGTTCTTTGCTGAGTCAAACACCAATTAATGGAGGGCTCAATTTTTCTGCCACTTTCAGTCCTGACCATGTGACTATGGCAACCAGTGTAAGTGAAAGTGGGGATTCTTCAGGCAAGACAACGAGTCATTTTCAGGCAGAACCAACCGATCAGTCAGCTAATCGGACTTCAGAATCAGTTCACATCAACCAGACAACCTCCAAAGCAGTGCCTTCAACTGGTTCCCTTGCCGGAACTAGGACAGAGATAAGAAGTCGTAAACGAAGATTAACATTTTACCATTCTGGAAACTTTCCAAATATGAACCTTGAACAAGAATTTGCACTTCACTCAAAGAAAGAAACAGCGGATGCCGACTCAACTATAGATGTTCTATGTGATGATCAATTTTATAATGACCTTGATCTTGACGAGTTGGAGGCACAAGCAACTTCGCTTCTAAAACGGAAATTAGATTTGTCAATTCAGAAGCAAGATACAATCCCTCAATCTCACTCACCGAACCTGGACATTTTTAGGTCTCCATCATTTGACCTTGGGATATGA 3570 0.4132 QEDAEGATCIHHIDAEAAKTWIYPVNVPLRDYQFAITQSALFSNTLVALPTGLGKTLIAAVVMYNYFRWFPQGKIVFAAPSRPLVMQQIEACHNIVGIPQEWTVDMTGQLSPPKRARFWKTKRVFFVTPQVLEKDIHSGTCLVKYLVCLVIDEAHRAMGNYAYCEAVRQLMAVPVQLRILALTATPGSKQQTVQDVIDNLHISKLEYRSETDHDVISYVHNRKVEVIQVAMGQDAAEINNKFLEVIRPVVARLTKIGVIQNRDYRTLSPCVLLEMREKFRQGPREDLSHVNYGDVEGYFGVLITLYYIHKLLSSHGIRPAYEMLERKLKQGFFAKFMSKNEVILKARQLMQQSLSHGASSPKLSKMLELLLEHFKTNDPQNSRVIIFSNYRESVRDIMDALGGTGELVRATQFIGQSTGKAMKGQSQKVQQAVLKKFRSGAYNVIVATSIGEEGLDIMEVDLVISFDANISPLRMIQRMGRTGRKHDGRVVVLACEGTELKGYLRKQAKSKTISKHMRNGGVNSFSFHPSPRMIPHILKPEVQYVELSIEKYIPREKNVKDDHLHISASKEKLTDAENDLLETYFHPTGENKCRLSLIAFPHFQTFPSRVHKVKHSFGTLMLIDMMQRLKGLVSFPGDSKTSLQEDLCLGNSNPVAITELDGGIKDNESCSRHTRGRNVVYVNCLELDSCHLEIQTKDSVDPTLQDSTLCDLGKHLEETCEGDETIPETPIAKKSVSNEGDNAGETINLVEIKTSLLVEDACLDGLRDELSPRLTNFIRSGVVPESPIDERGQSRNNFVIRDCISPVHLLEQGNVSSLCFRETEKVIIDSGPGKNASTSPVVNETQTPLLELKKYAIRRGRVFLSPTDEDHTHIADPCFSGESHLGCGEMSLSIKPARKFKRLRKADDIDSNMNQKNNNCFASTANLLKSSSTSNPTRCKHGQGKRTPTHTVRDFIEEEAEVSSDAYISNDEDDEDGNSVDSFIDDRTNPSAASQAEASRMDMMAIYRRSLLSQTPINGGLNFSATFSPDHVTMATSVSESGDSSGKTTSHFQAEPTDQSANRTSESVHINQTTSKAVPSTGSLAGTRTEIRSRKRRLTFYHSGNFPNMNLEQEFALHSKKETADADSTIDVLCDDQFYNDLDLDELEAQATSLLKRKLDLSIQKQDTIPQSHSPNLDIFRSPSFDLGI 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2315g00029 1189 CDD SF2_C_FANCM_Hef 360 494 - -
Gabi2315g00029 1189 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 36 204 IPR014001 -
Gabi2315g00029 1189 FunFam Fanconi anemia, complementation group M 24 219 - -
Gabi2315g00029 1189 Gene3D - 350 520 IPR027417 -
Gabi2315g00029 1189 FunFam ATP-dependent RNA helicase, putative 350 520 - -
Gabi2315g00029 1189 Pfam Type III restriction enzyme, res subunit 42 186 IPR006935 GO:0003677|GO:0005524|GO:0016787
Gabi2315g00029 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 499 IPR027417 -
Gabi2315g00029 1189 MobiDBLite consensus disorder prediction 1036 1084 - -
Gabi2315g00029 1189 MobiDBLite consensus disorder prediction 961 997 - -
Gabi2315g00029 1189 CDD FANCM_ID 236 350 IPR039686 GO:0006281|GO:0043138
Gabi2315g00029 1189 MobiDBLite consensus disorder prediction 964 980 - -
Gabi2315g00029 1189 Gene3D - 25 219 IPR027417 -
Gabi2315g00029 1189 SMART helicmild6 392 486 IPR001650 -
Gabi2315g00029 1189 CDD DEXDc_FANCM 27 208 IPR044749 GO:0005524
Gabi2315g00029 1189 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 533 IPR001650 -
Gabi2315g00029 1189 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 11 1173 - -
Gabi2315g00029 1189 Pfam Helicase conserved C-terminal domain 363 485 IPR001650 -
Gabi2315g00029 1189 SMART ultradead3 25 225 IPR014001 -
Gabi2315g00029 1189 Coils Coil 1144 1164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2315g00029 Gabi-Chr2315 200192 214313 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2315g00029 317 484 Eukaryotic Initiation Factors Gene Family AT3G13920 26.374 1.89e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2315g00029 K10896 - gmx:100820078 1664.43