Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2315g00019 ATGAGTCAGTTGCCATGCGACAGCGAAGGCGTGTGTATGGTATGCAAGACTCAGCCCTCCGAAGGAGAGAAGCTCAACTGCTTCACCTGTGGCACTCCATGGCATGTCGCCTGTGTTTCCAACCTTCCAGCCACCCTCGCTAATACTGTTGATTGGGTCTGTCCTGACTGTTCTAATCTTTTGGTACCACCACCACCTGCCTTAACCCCAAATGATGCCTCCGGTAACCTGATTGCTGCCATGTTAGCTGTGGAGAGTGATGCTTCTCTCACTGTAGAAGAGAAGGCCAGAAGACGCCAAGAGCTGATGACCGGAAAGACCATCCCAGAAGAACATCTTGACAACATCAAGAAGAACGATGTGTCTGAAATCCTCAGTAGGACTCTCAACTGCTCCATCTGTATTCAGCTACCGGAAAGACCGGTCACGACTCCGTGTGGGCACACTTTCTGTCTAAACTGTTTTGAGAAATGGATTCGGCAAGGGAAAAGAACTTGTGCCAAATGCCGTCAGAGTATCCCTGCAAAAATGGCAAATCAGCCCCGTATCAATTCAGCATTGGTATTTGCTATTCGTATGGCAAGGGCATCCAAGAATAATGGTGGCGGAGGGCCTTCTGGTGTTCACCATTTCGTACATAACCAAAATAAACCAGATCAGCCATATGTTACGGGCCGTGCACAAAGGAATGGTCGTGCAAATGCTGCAAGTGGAAAGATTTTCGTAACTGTGCCTTCTGATCATTTTGGTCCAATCCCACCGGAGAATGACCCTGTGCGGAATCAGGGTCTGCTTGTCGGTGAATCTTGGCCAGATAGGCTGGAGTGCAGACAATGGGGTGCTCACTTCGTTCCAGTTGGTGGCATTGCTGGACAGTCAAATCGTGGTGCACAATCAGTTGTTCTTTCTGGAGGTTATGTTGATGATCAGGATCACGGAGAATGGTTTCTCTACACAGGAAGCGGTGGCAAAGATCTTAGCGGCAACAAACGCACAAACAAGACACACTCTTTTGACCAGAAGTTTGAAAAGTACAACCGGTCACTCCAAGTTAGTTGTCTAAAAGGTTATCCGGTTCGAGTTGTGAGATCTCACAAAGAAAAGCGATCCTCATATGCCCCCGAGAGTGGAGTGCGGTATGATGGAATTTATAGAATTGAAAAATGTTGGCAGATAGCAGGATTGCAGGGTTTCAAAGTTTGCCGGTATCTGTTCGTTAGATGTGACAATGAACCTGCCCCTTGGACAAGTGATGATCATGGGGATAGGCCCAGACCCTTGCCAGCCATTCGTGAGCTGAAAAAGGCTACAACTATATTTGAAAGGACCGAAACTCCATCTTGGGATTTTGATGAGGAAGATTCTTGTTGGAAATGGAAGAAACCACCTCCTCCTAGCGAAAAAAAGGTACAAACTCAGGAACCCGTGGAGATTGCAAGGTTAAGCAGAGAAATAAGGAAGTCCCAAACTATCTCAATCAAGGAACAATTGAGTAGAGGGTTCTCGTGCCTAATATGCAGGCAGGTTATGGTTTCACCGGTGACAACACCGTGTGGTCATAGTTTCTGCAAATCGTGTTTGGAAGGTGCTTTTGCTGGTCAGGCTTTTGTGAAAGATAGAAGCAGGGGTGGGAGAACGCTTCGGTCCCAGAAAAATGTGATGAAATGTCCTACTTGCCCTATTGACATCTCTGATTATCTTCAGAACCTTCAGGTTGATGTAGATTTGAAGGCTGCGATTGAGTCACTGAAAGCCAAGGCTGAAGAAAATGGAGAATCGGGGGAGTCCGATGAGGATTCAGATGGATTACAGGAAGATTCTGCTGGCACGGATGAACATACTGGCTCAGTGAACAAAAATTCTGTAGAGGAGTTGAATGATTCACCTGAAGGATCTGATGTGGGTGAACTCAAAGTGACCAATGAGGTGCCAGATCCAGCAGTGAAGCGCAATACAAAGAGAAAGAAAGCTGATTCTGGAGAAAAACTGCCTGAAATGAGTGATGGTAAAATGGCTAAAAAGGGCAAAAGATACAGTAAGAGAATGGCTGAGAAAGCAGTGGATGAAGGAAATGATTCTCCGTCAAGTCCTCTCAATCTACCATTAAATCATGACTGA 2118 0.4636 MSQLPCDSEGVCMVCKTQPSEGEKLNCFTCGTPWHVACVSNLPATLANTVDWVCPDCSNLLVPPPPALTPNDASGNLIAAMLAVESDASLTVEEKARRRQELMTGKTIPEEHLDNIKKNDVSEILSRTLNCSICIQLPERPVTTPCGHTFCLNCFEKWIRQGKRTCAKCRQSIPAKMANQPRINSALVFAIRMARASKNNGGGGPSGVHHFVHNQNKPDQPYVTGRAQRNGRANAASGKIFVTVPSDHFGPIPPENDPVRNQGLLVGESWPDRLECRQWGAHFVPVGGIAGQSNRGAQSVVLSGGYVDDQDHGEWFLYTGSGGKDLSGNKRTNKTHSFDQKFEKYNRSLQVSCLKGYPVRVVRSHKEKRSSYAPESGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPAIRELKKATTIFERTETPSWDFDEEDSCWKWKKPPPPSEKKVQTQEPVEIARLSREIRKSQTISIKEQLSRGFSCLICRQVMVSPVTTPCGHSFCKSCLEGAFAGQAFVKDRSRGGRTLRSQKNVMKCPTCPIDISDYLQNLQVDVDLKAAIESLKAKAEENGESGESDEDSDGLQEDSAGTDEHTGSVNKNSVEELNDSPEGSDVGELKVTNEVPDPAVKRNTKRKKADSGEKLPEMSDGKMAKKGKRYSKRMAEKAVDEGNDSPSSPLNLPLNHD 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2315g00019 705 ProSitePatterns Zinc finger RING-type signature. 518 527 IPR017907 -
Gabi2315g00019 705 ProSitePatterns Zinc finger PHD-type signature. 12 57 IPR019786 -
Gabi2315g00019 705 SUPERFAMILY PUA domain-like 233 431 IPR015947 -
Gabi2315g00019 705 SUPERFAMILY FYVE/PHD zinc finger 4 63 IPR011011 -
Gabi2315g00019 705 SUPERFAMILY RING/U-box 124 177 - -
Gabi2315g00019 705 MobiDBLite consensus disorder prediction 586 705 - -
Gabi2315g00019 705 MobiDBLite consensus disorder prediction 647 673 - -
Gabi2315g00019 705 Pfam RING-type zinc-finger 503 557 IPR027370 -
Gabi2315g00019 705 MobiDBLite consensus disorder prediction 609 627 - -
Gabi2315g00019 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 7 60 IPR013083 -
Gabi2315g00019 705 FunFam Predicted protein 93 196 - -
Gabi2315g00019 705 SMART G9a_1 254 411 IPR003105 -
Gabi2315g00019 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 196 IPR013083 -
Gabi2315g00019 705 ProSiteProfiles YDG domain profile. 259 407 IPR003105 -
Gabi2315g00019 705 CDD RING-HC_ORTHRUS_rpt1 129 174 IPR047498 -
Gabi2315g00019 705 Pfam SAD/SRA domain 262 410 IPR003105 -
Gabi2315g00019 705 ProSiteProfiles Zinc finger RING-type profile. 131 170 IPR001841 -
Gabi2315g00019 705 SMART PHD_3 11 58 IPR001965 -
Gabi2315g00019 705 Gene3D - 230 426 IPR036987 -
Gabi2315g00019 705 Pfam Zinc finger, C3HC4 type (RING finger) 131 169 IPR018957 GO:0046872
Gabi2315g00019 705 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 2 607 IPR045134 -
Gabi2315g00019 705 SMART ring_2 131 169 IPR001841 -
Gabi2315g00019 705 SMART ring_2 503 559 IPR001841 -
Gabi2315g00019 705 SMART ring_2 12 57 IPR001841 -
Gabi2315g00019 705 SUPERFAMILY RING/U-box 495 585 - -
Gabi2315g00019 705 ProSiteProfiles Zinc finger RING-type profile. 503 559 IPR001841 -
Gabi2315g00019 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 603 IPR013083 -
Gabi2315g00019 705 ProSiteProfiles Zinc finger PHD-type profile. 9 60 IPR019787 -
Gabi2315g00019 705 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 230 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2315g00019 Gabi-Chr2315 128262 137656 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2315g00019 2 589 C2H2 Transcription Factor Family AT5G39550 57.311 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2315g00019 K10638 - gmx:100801535 1053.12