Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2315g00013 ATGCAACCCACATCTGGTGGCCTGGCACGGTTCCGCTCAACTCCGGCGAGCTGGTTAGAATCACTTCTTCTTAAGGAGGAAAGCGAAGGCGAAGACCCATTGAGTTTCACTCAGCTTCTTTCCAGTAACGCTGCTGGAACTTCAACAGGGAACTCTCTCTCTGCCTCTCAACAATATGAGGACGATTACCACTACGATATTCATGGCCATGCTAATCCAATCTCACACATGCAGGAAGTTGAGGACAGTGGTAAAGCACCCGACATGAACATGGACAAGATTTTAGAGGATTCGGTACCTTGTAGGGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCAAGGAGTATTGCAGAAAGGGTTCGTAGGACTCGTATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGACATGTTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAGCAAATTGAGGAACTCTCAGAGCACCAGCAGAGATGTAAATGCATGGTTGAAGACTAA 540 0.4685 MQPTSGGLARFRSTPASWLESLLLKEESEGEDPLSFTQLLSSNAAGTSTGNSLSASQQYEDDYHYDIHGHANPISHMQEVEDSGKAPDMNMDKILEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELSEHQQRCKCMVED 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2315g00013 179 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 176 IPR036638 GO:0046983
Gabi2315g00013 179 FunFam Transcription factor bHLH130 family 110 178 - -
Gabi2315g00013 179 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Gabi2315g00013 179 Gene3D - 110 179 IPR036638 GO:0046983
Gabi2315g00013 179 Coils Coil 149 179 - -
Gabi2315g00013 179 CDD bHLH_AtbHLH_like 114 167 IPR045239 -
Gabi2315g00013 179 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Gabi2315g00013 179 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 173 - -
Gabi2315g00013 179 SMART finulus 115 165 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2315g00013 Gabi-Chr2315 102136 105862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2315g00013 75 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 71.560 1.21e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2315g00013 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2315g00013 - - gmx:100527723 204.912