Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2315g00012 ATGCAACCCACATCTGGTGGCCTGGCACGGTTCCGCTCAACTCCGGCGAGCTGGTTAGAATCACTTCTTCTTAAGGAGGAAAGCGAAGGCGAAGACCCATTGAGTTTCACTCAGCTTCTTTCCAGTAACGCTGCTGGAACTTCAACAGGGAACTCTCTCTCTGCCTCTCAACAATATGAGGACGATTACCACTACGATATTCATGGCCATGCTAATCCAATCTCACACATGCAGGAAGTTGAGGACAGTGGTAAAGCACCCGACATGAACATGGACAAGATTTTAGAGGATTCGGTACCTTGTAGGGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCAAGGAGTATTGCAGAAAGGGTTCGTAGGACTCGTATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGACATGTTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAGCAAATTGAGAGCACCAGCAGAGATGTAAATGCATGGTTGAAGACTAAATTGCTGATTGTTCGCATATAG 552 0.4638 MQPTSGGLARFRSTPASWLESLLLKEESEGEDPLSFTQLLSSNAAGTSTGNSLSASQQYEDDYHYDIHGHANPISHMQEVEDSGKAPDMNMDKILEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIESTSRDVNAWLKTKLLIVRI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2315g00012 183 FunFam Transcription factor bHLH130 family 110 176 - -
Gabi2315g00012 183 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Gabi2315g00012 183 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Gabi2315g00012 183 CDD bHLH_AtbHLH_like 114 167 IPR045239 -
Gabi2315g00012 183 SMART finulus 115 165 IPR011598 GO:0046983
Gabi2315g00012 183 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 167 - -
Gabi2315g00012 183 Gene3D - 110 179 IPR036638 GO:0046983
Gabi2315g00012 183 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 169 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2315g00012 Gabi-Chr2315 102136 105863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2315g00012 75 164 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 73.196 9.39e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2315g00012 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2315g00012 - - gmx:100527723 179.489