Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2315g00011 ATGCAACCCACATCTGGTGGCCTGGCACGGTTCCGCTCAACTCCGGCGAGCTGGTTAGAATCACTTCTTCTTAAGGAGGAAAGCGAAGGCGAAGACCCATTGAGTTTCACTCAGCTTCTTTCCAGTAACGCTGCTGGAACTTCAACAGGGAACTCTCTCTCTGCCTCTCAACAATATGAGGACGATTACCACTACGATATTCATGGCCATGCTAATCCAATCTCACACATGCAGGAAGTTGAGGACAGTGGTAAAGCACCCGACATGAACATGGACAAGATTTTAGAGGATTCGGTACCTTGTAGGGTTCGGGCAAAGCGTGGCTGTGCTACGCATCCAAGGAGTATTGCAGAAAGGGTTCGTAGGACTCGTATCAGTGACCGCATAAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGACATGTTAGATGAGGCGGTAGCTTATGTCAAGTTTCTACAAAAGCAAATTGAGTTGAGTAACTTAAAAACATTGCAGGAACTCTCAGAGCACCAGCAGAGATGTAAATGCATGGTTGAAGACTAA 564 0.461 MQPTSGGLARFRSTPASWLESLLLKEESEGEDPLSFTQLLSSNAAGTSTGNSLSASQQYEDDYHYDIHGHANPISHMQEVEDSGKAPDMNMDKILEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIELSNLKTLQELSEHQQRCKCMVED 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2315g00011 187 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 109 159 IPR011598 GO:0046983
Gabi2315g00011 187 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 175 - -
Gabi2315g00011 187 Pfam Helix-loop-helix DNA-binding domain 114 160 IPR011598 GO:0046983
Gabi2315g00011 187 SMART finulus 115 165 IPR011598 GO:0046983
Gabi2315g00011 187 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 167 IPR036638 GO:0046983
Gabi2315g00011 187 Gene3D - 110 184 IPR036638 GO:0046983
Gabi2315g00011 187 FunFam Transcription factor bHLH130 family 110 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2315g00011 Gabi-Chr2315 102136 105863 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2315g00011 75 184 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 67.521 2.63e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2315g00011 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2315g00011 - - gmx:100527723 197.593