Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2311g00001 ATGGAGAATCATATGGAGGGTGTGCACTGGTGCAACATGTGCTCTAAAATGGTGAATCCAATGACTGAAGCTGAGAACAAATGTCCATTCTGTGAGACAGAATTTTCTGAGGTAATGGACAACCTAAGGGACCAGAATGAAACTGTTGATATAAGATCAGCTTGGGTGTTCTCACTTTATGCCCCAATCTTTCTAGGCTTGATGGGTGCTTTTAGCCCTTCTCTTGCAAGCATTGGTTCACAAGAAAGTAGCAGTTCAAGAGTTGAGGAAGAGGTTGAACAAGAGAGGGAAAATGAACTTGTACTTGGGGGAAGGAGAAGAGCCTCAACAACTCCTATGATGCATCTCTTTAGGGGTCTTCATGTTAGGATGGTGTCTGAATCTGAGAACCAAGAAAACAATAGGAACTTAGATAGCAGTATACTTGTCATTGATTCATTCAATGAAGGGGCCTTGATTGTTAGAGGTCCTAACTTGAACCACACAAGTAGTCCGAATGAGAACATTGTTGGTTCCTTAAATGACTTTCTTGTAGGATCTAGCTTTGATTTGTTGCTACAGCATTTGGCACAGAATGTCCCTAGTGGATATTCAAGTGTAAACCCTCCAGCACAGAAGGCAGCAATTGAAGCAATGCCTAGTGTGACTAGTGAGGAAAAGTTGCAGTGCACTGTATGTTTGGATGATATTGAGATTGGGAGTGAAGCCAAGGAGATGCCATGTAAGCATAAGTTTCATGGTGATTGCATTGTCTCATGGCTAAAGCTCCATAGTTCTTGTCCAGTTTGCAGGTTTCAGATGCCTTCTGAGGATTCAACTGTTGAAGCCATTTTGGGAATTGGAAATGGGGACACTCAGAACAGTGAGCTAGTCAGGGCTAGAGAAGAGAGAACTAGAAATGGAAGGAGGCATTGGTTTCCTATGCTGCAGTCATTTAATAATTTTCTTCCTTCTCCTTGA 960 0.4229 MENHMEGVHWCNMCSKMVNPMTEAENKCPFCETEFSEVMDNLRDQNETVDIRSAWVFSLYAPIFLGLMGAFSPSLASIGSQESSSSRVEEEVEQERENELVLGGRRRASTTPMMHLFRGLHVRMVSESENQENNRNLDSSILVIDSFNEGALIVRGPNLNHTSSPNENIVGSLNDFLVGSSFDLLLQHLAQNVPSGYSSVNPPAQKAAIEAMPSVTSEEKLQCTVCLDDIEIGSEAKEMPCKHKFHGDCIVSWLKLHSSCPVCRFQMPSEDSTVEAILGIGNGDTQNSELVRAREERTRNGRRHWFPMLQSFNNFLPSP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2311g00001 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 270 IPR013083 -
Gabi2311g00001 319 SUPERFAMILY RING/U-box 212 269 - -
Gabi2311g00001 319 Pfam Ring finger domain 222 264 IPR001841 -
Gabi2311g00001 319 SMART ring_2 223 263 IPR001841 -
Gabi2311g00001 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 115 268 - -
Gabi2311g00001 319 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Gabi2311g00001 319 FunFam E3 ubiquitin-protein ligase RNF181 194 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2311g00001 Gabi-Chr2311 17945 18904 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2311g00001 141 282 C3H Transcription Factor Family AT1G26800 32.867 2.79e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2311g00001 - K11982 gmx:100790855 503.827