Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2303g00011 ATGGAGAACGACAAGATGGAAGACTATGAAGTAATAGAGCAAATTGGAAGAGGAGCATTAAGTGCATCTTTTCTCCTTCTCCACAGGACTGAGAAAAAGAGGTATGTGCTGAAGAAGATTCGGTTGGCCAAGCAAACGGACAAGTTCAAACCGACAGTGCACCAAGAGATGGACCTGATAGCGAAACTAAATTACCCTTATATTGTGGAATACAAAGATGCATGGGTGGAGAAGGAGGACTACATATACATTATAACTGGCTATTGGGAAGGAGGTAACATGGCTGAGAATATAAAGAAAGCTCGAGGATCTTTTTTTTCTGAGGAGAAAGTCTGCAAATGGATGACTCAATTGTTGCTAGCTGTGGACTACCTTCACTCTAATCGTGTGCTCCACGGAGATCTTAAGTGTTCCAACATTTTTCTCACTAAGGACAATAACATTCGGCTAGGTGACTTTGGTCTTGCAAAGCTACTTAATACTGAAGACCTTGCTTCCTCGGTTGTTGGAACTAGAAACTACATGTGTCCTGAGATCCTTGCTGCTACACCTTATGGTTATAAATCTGATATATGGTCGCTTGGTTGCTGCATGTTTGAAATTACTGCACATCAACCGGCATTTCGTGCTCCAGACAAGGCTGGACTTATCAATAAAATAAATAGATCCTCCATTTCTCCACTGCCAATTGTTTACTCTTCCACACTGAAACAACTTATTAAGAGCATGCTTAGGAAAAGTCCAGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCATTTGCAACCCTTTGTTCTCCGCTGTCATAACGCATCATCTGTTTTTCTACCTGTGCATCTCATAAGTAGTCCCTCGAAGGATAAAACAAAAAAGTCTAGTGGTGGCAAAGACCATAGGGACAAAGAAGCGGGATTAGTAAATCATTTGGAGAGGATTTATCCAATTGAGGGAAATGGAAATGTAGGGACAAGCAACCAGCCTGATGATGGCAAGCTAGCAGTGTCAACCAATGGAGAAGGCAACCTTGGGACTACAATGGTTGATCCTACCAGCTACACAGTGGAATTTTCTACTAGTATCAGTGGCTCAAAAGATGGGTCAATGACATCTGAATCAACTATTTGCAGTGTATGCAAGGAAGCAGACTTGAAAAGTAGATCTGCAAGGGACACTGTTGACAGTGAGATCACTTCAAAGAGTGTGCTAGATTCTGTGCATGAAGAACAAGGATCTGCTGCTCAACATTTTCAGAAGTCACATGCAATTGACGTAAATTCAGTGATTAAAAAAGTTGAAGATAAATTTCCCAATGAAGGTTTTGATAAAGCTGAAGCACAGAGGGAAGATGCCAAACCTGAGGGCTCCAGTAAATCAATAATGTCCAGTGAAGAGAGTAACGGAAATGACAAAGATGGGTCCATTGATGATATCACATCAAAGGGTACACTTGATTCTGTGCATGAACTTGCTACTCAACAATTTCAGAAGTCATATGCAAATGACATAAATTCATTGATTAAAAAAATTGAAGATCTAATTTCTAATGATGCTTTTGATAATGCTGAAGCACAGAGTGAAGGTGCCAAACCTGAGAACTCCAATAAATCAATAATGTCCAGTGAAGACAGCAACGGCAATGATAAAGATGGATCCATTGATGAGATCACATCAAAGAGTATGCTAGATTCTGTGTATGAAGAGCAAGGATTTTCTGCTCAACATTCTCAGAAGTCATATGCAATTGACATGAATTCAGTGATTAAAAAGGCAGAAGATAAATTTTCTTATGAAGGTTTTGATAAAGCTGAAGCACAGAGGGAAGATGTCAAACCTGAGAACTCCATTAAATCAATAATGTCCAGTGAAGACAGCAACAGCAATGATAAAGATGGGTCCATTGATGAGATCACATCAAAGAGCACACTTGATTATCTGCATGAACGAGGATTTGCTGCTGAACATTTTCAGAAGTCAGATGCCATTGGCATAAATGCAGTGACTACAAAAGTTGAACATACTTTTTCAAATGAAGGTTTTGATAAAGCTGAAGCAGATAGTAAAGATGCCAAACCTGAGGACTCCATTAAATCAATTATGACCAGTGAAGACAGCAACGGCAATGATAAAGATGAGTCCATTGATGAGATCGCATCAAAGAGTACACTTGATTATCTGCATGAAGAACAAGGATTTGCTGCTGAACATTTTCAGAAGTCAGATGCCATTGACATAAATGCAGTGACTACAAAAGTCGATGATACTTTTTCAAATGAAGGTTTTGATAAACTTGAAGCAGATAGGGAAGATGCCAAACCTGAGGACTCCATTAAATCAATAATATCCAGTGAAGCTAACAGCGGCAATGATAAAGAGGGGTCCATTGATGAGGAAAGGTCATTACCAATTATGCATCCTGTTAGGGTTGAACATGACACTGAAACTGGAAGCTGCTTGAAGGAAAGTGAATACCCTGAAGCATTGACAGAAGAAGGCTTACTCATTGACAACTTGACCTCTGAGAATAATGGTACACTTCCAGGTAAGGATGAAGGCAGATTAAACACATGCATCATCAGGTGCGCCACGCATAAAGAAGATAATGCTGTTTTGGTTGATAAGACACCAAATAGCATTTCAAATTGTGCATGTATTTCAATTGGTGGTGACGAAACAAAGAGTGCGTTGGATAATCCCTGCCAGCAAAGAGCTCATGCAATGGAATCTCTGCTTGAGTTATGTGCAGAACTACTTAAACAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCAGTTTCTTCCAGAGAAACAGCAATATGGCTCACAAAAAGCCTCATGTCCTCACAAAAATTTAACCTGGAAACCTAG 2889 0.3991 MENDKMEDYEVIEQIGRGALSASFLLLHRTEKKRYVLKKIRLAKQTDKFKPTVHQEMDLIAKLNYPYIVEYKDAWVEKEDYIYIITGYWEGGNMAENIKKARGSFFSEEKVCKWMTQLLLAVDYLHSNRVLHGDLKCSNIFLTKDNNIRLGDFGLAKLLNTEDLASSVVGTRNYMCPEILAATPYGYKSDIWSLGCCMFEITAHQPAFRAPDKAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKSPEHRPTAAELLRHPHLQPFVLRCHNASSVFLPVHLISSPSKDKTKKSSGGKDHRDKEAGLVNHLERIYPIEGNGNVGTSNQPDDGKLAVSTNGEGNLGTTMVDPTSYTVEFSTSISGSKDGSMTSESTICSVCKEADLKSRSARDTVDSEITSKSVLDSVHEEQGSAAQHFQKSHAIDVNSVIKKVEDKFPNEGFDKAEAQREDAKPEGSSKSIMSSEESNGNDKDGSIDDITSKGTLDSVHELATQQFQKSYANDINSLIKKIEDLISNDAFDNAEAQSEGAKPENSNKSIMSSEDSNGNDKDGSIDEITSKSMLDSVYEEQGFSAQHSQKSYAIDMNSVIKKAEDKFSYEGFDKAEAQREDVKPENSIKSIMSSEDSNSNDKDGSIDEITSKSTLDYLHERGFAAEHFQKSDAIGINAVTTKVEHTFSNEGFDKAEADSKDAKPEDSIKSIMTSEDSNGNDKDESIDEIASKSTLDYLHEEQGFAAEHFQKSDAIDINAVTTKVDDTFSNEGFDKLEADREDAKPEDSIKSIISSEANSGNDKEGSIDEERSLPIMHPVRVEHDTETGSCLKESEYPEALTEEGLLIDNLTSENNGTLPGKDEGRLNTCIIRCATHKEDNAVLVDKTPNSISNCACISIGGDETKSALDNPCQQRAHAMESLLELCAELLKQGKLEELAAVLRPFGEDAVSSRETAIWLTKSLMSSQKFNLET 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 522 547 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 522 562 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 320 350 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 764 778 - -
Gabi2303g00011 962 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2303g00011 962 Gene3D Phosphorylase Kinase; domain 1 1 88 - -
Gabi2303g00011 962 Pfam Protein kinase domain 9 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2303g00011 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi2303g00011 962 CDD STKc_Nek 8 263 - -
Gabi2303g00011 962 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2303g00011 962 SUPERFAMILY Protein kinase-like (PK-like) 6 288 IPR011009 -
Gabi2303g00011 962 FunFam serine/threonine-protein kinase Nek6 isoform X2 89 277 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 764 799 - -
Gabi2303g00011 962 Gene3D Transferase(Phosphotransferase) domain 1 91 306 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 444 481 - -
Gabi2303g00011 962 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 6 705 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 286 309 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 601 615 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 601 636 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 677 717 - -
Gabi2303g00011 962 MobiDBLite consensus disorder prediction 286 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2303g00011 Gabi-Chr2303 261108 269677 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2303g00011 9 264 MAP Kinase Kinase Kinase AT3G13530 31.128 3.64e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Gabi2303g00011 Pkinase 9.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2303g00011 K08857 - gmx:100818558 1133.24