Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2302g00011 ATGCCTTCAAAGGTGAGAATGATGCAAAGGATGATGGTCTTGGATCAAACTTGTTCTGATATAACAGGTATCTCTAAGAAAAATTATGAAGAGAAAAAGCTACCATTATCACTTCTAGGAACTGATAATAGCGGCAACAATTCTTCAAACCAAAGCAGTAGTATCACTGTTAGGGTTTGCTCTGATTGTCACACCACTAAGACCCCTCTTTGGAGAAGTGGACCAAGAGGTCCCAAGTCACTTTGCAATGCCTGTGGGATACGGCAAAGGAAGGCAAGACGTGCCATTGCCGCTGCAAATGGTACAATTTTAGTGGGGGCTGAGAAACCTCATGTGAAGGGAAATAAGTTGCACAACAAAGAGAGGAAGTCCAAAACCGAGAGTGCACCAAAGTTGAAAAAGAAGCGTAAACTTGAAGCCAATGCCAATTCATCTCGAGGTAGAAAGAAGTTCGGTTTTGAGGATTTGACAATAAGCTTGAGTAATAACTTGGCTCTCCAACAAGTTTTCCCTAAGGATGAGAAGGAGGCTGCGATATTGCTTATGGCTTTATCTTATGGTCTACTTCATGGCTTTCCCTCAGATATCTTTACTTAG 597 0.4188 MPSKVRMMQRMMVLDQTCSDITGISKKNYEEKKLPLSLLGTDNSGNNSSNQSSSITVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAIAAANGTILVGAEKPHVKGNKLHNKERKSKTESAPKLKKKRKLEANANSSRGRKKFGFEDLTISLSNNLALQQVFPKDEKEAAILLMALSYGLLHGFPSDIFT 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2302g00011 198 MobiDBLite consensus disorder prediction 109 146 - -
Gabi2302g00011 198 CDD ZnF_GATA 59 87 IPR000679 GO:0006355|GO:0043565
Gabi2302g00011 198 MobiDBLite consensus disorder prediction 111 146 - -
Gabi2302g00011 198 ProSitePatterns GATA-type zinc finger domain. 60 85 IPR000679 GO:0006355|GO:0043565
Gabi2302g00011 198 SMART GATA_3 54 106 IPR000679 GO:0006355|GO:0043565
Gabi2302g00011 198 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 191 - -
Gabi2302g00011 198 Gene3D - 55 98 IPR013088 GO:0006355|GO:0008270
Gabi2302g00011 198 ProSiteProfiles GATA-type zinc finger domain profile. 58 90 IPR000679 GO:0006355|GO:0043565
Gabi2302g00011 198 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 56 93 - -
Gabi2302g00011 198 Pfam GATA zinc finger 60 93 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2302g00011 Gabi-Chr2302 225377 226314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2302g00011 56 191 C2C2-Gata Transcription Factor Family AT4G26150 46.154 1.07e-33 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gabi2302g00011 GATA 1.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2302g00011 - - gmx:100780875 229.565