Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2302g00004 ATGAAGATGGGGCTGGTTTTGGCACTGATTCTTCAGCTGGTGAAGCTCTACATCATTGGCTTTACTGTTGCATTCCAAGGTTCCGAAGGGTCTATTATATCCCCATCTCCAGCATTTGTCATTCATCCTAGAGGAGAAACACCTGGTCCCATCCATCATGGACAGACATGGGGAAGCAGTGCACCAAGCTCTCCTTCAGATCCAGATGGGTTTGTTTTATCCCCATCTCCAGCAACCTTACCTGTGGATCCTTCCCCCAGTGAAGCGCCTGGCCTTTTACCCCCAAGAGATCTAGGGAGAACCATTTCCCCAAGCTCTCCAGAAGCACCAAATGGTCCAGGGTCATTGTTGCACCCTCCAGTTACATTACCACTTCCTAAGTCAGCTCCAACTCCTCAAAAGATTAAAGGAGTTGAACCATCCATTTCTCCTAGTCCTAGTCCAAGCACCATAACATTATCACCACCATATATGGCTCCTCCTGCACCATCCACTGCTCCAGAGAATGTGCCACCGTCCATACAACCAAGTCCACCTCAAAGGAAAGCACCTACTGTTAGGCCTCCCGTATCCACACCAATTGCTCCAGCTCCAGTTGCAATACCTTCTAGCAATTTGCCAAAAACTTCACCAGTCAGCCAACCAATAGAACATGGAAGTTTGCCTCCTAAGATTGATAAGAGGAATGCAAGTAAGAGTTACACCCCAGAGCCAGTTTCACCAGCGCCAGTTGCTATACCTTCTACCAATTTGCCTAAAATTTCACCAGGGAGGCAACCAACTGAAAATGGAAGTTTGCCTCCAAATGTTCATAGAAAGGGTGCAAATAAAGGTCATACCCCAGAGCCAATTTCACCAGCTCCTGTTGTATTCAATTTGCCCAAATATTCGCCGGTGAGTCAGCCAACTAACAATGGAAGTTTGCCTCCAACTGTTCATAGAAGAAAATCCAACTCGAGTCACGCATGGGAGCCAGTTTCACAAGCCCCAGTTTCAATACCTCCTGCAATTTTGCCAAAAAATTCACCACTCAGCCAACCAACTCATCATGGAAGTTTTCCACCTAATGTTCATAAAAGAACTGCAAATATGGGTCATGCTCACACCCCAGGGCCAGTACCACCACAATCTGTTGCATCCCCACCATGGAAAATGGAAAATAACCAGCCAGTAGGTCACCCTATTTTACCAGAATTAACTCCATCCATATTACCTGCACCAGTTACATCACCAACAAGTCCATTTCCAGTTCATCCGCCATTGATCCACCCAGTCATACCAGCAGCATCTCCATCCAAATTACCAGCTCCTGTTGTCTCTCCTGCATTAACTCCTTCCGGAAGCTTCAATTGGAAAAAAGGTGGAGAACCAGTTTCTGCACCTTTGTACAAAACTCCAAAGCCACTACCGGCTATAGTACACTCCCCTGCTCAAGCTCCTGCTGCACATACAGCAAGGCAATTTCGTCATGCTCCTGAGCCAATGATTTCATCTCCTAAATCTCCTTTGAATAAAGAAGATCATTCTCCTGCATCTTCACCTTCAACCACATTTTATAAGCATCACCATACAAGGAACACAATAACCAGTCCTGCTCCTGCATCATCATATTTGGTTTCTCCTCCCAGTTCGAAACACCAAGATCAACCAATTCCTCCCTCATTACTGCCAACAAGTGGAAGAAGACACAATGCTCCATCACCAATGAACACAGTTCAATTTCATCCTCCTAAAGTATCTCCTTCTCGGCCTTCTTCCAAGAGCCCTAAGATGCCAGTCCTGCCTCAAGTTAAAGCACTGCCACCCCCACCTCCCAATGAAGATTGTTTATCAACTGTTTGCTCAGAGCCCTACACAAATTCTCCACCTGGAGCCCCTTGTAGATGTGTCTGGCCCATGAAAGTTGGCCTTCGCCTTGGTGTTTCTCTGTATACATTCTTCCCTTTGGTTTCAGAGCTTGCTTCTGAAATTGCCTCTGGGGTTTTCATGAGACAAAGTCAAGTTCGCATTATGGGAGCCAATGCAGCAAGCCAGCAACCAGATAAAACTATTGCCCTCATTGATTTGGTACCACTTGGGGAAGAATTTGATAACACTACAGCCTTTTTGACTTCTGAGAGATTTTGGCACAAACAGGTTGCTATAAAAGCATCTTACTTTGGTGATTATGACGTGTTGTATGTGAGCTATCCAGGTTTACCCCCATCTCCTCCTTTACCACCTTCAAGCATTACCATGATAGATGGTGGCCCATATTCAACTGATGGAAATAATGGTAGGACAATAAAGCCCCTTGGGGTTGACATACAGAAGAGGCCGCATAAAGGTGGACTTAGCAAGGGCATAATAGCTATTATTGCTCTTTCTGTTTTTCTAGCAGTTGTTTTATGCTTTGCTGCTGTTTGGGCCTTGTTCAAGCACAGAGATCATGTAAGTCAACCAACATCAACCCCACGGGTTTTGCCTTCTCTCACCAAAGCACCAGGTACTGCTGGGTCATTAGCTGGAGGCGGGCGTGCTTCAGCTTCATCATCATTTCGATCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTACAGTATGAATGACATTGAGAAAGCCACTGATAATTTTCATGATTCTAGAATACTTGGAGAAGGTGGTTTTGGGCGTGTTTATGGTGGTATCCTTGAAGATGGAACAAAAGTGGCAGTCAAGGTTCTAAAAAGGGAGGATCATCATGGTGATCGTGAATTCTTATCTGAAGTTGAGATGCTTAGCCGCCTTCACCATAGAAATTTGGTTAAGTTGATTGGTATATGTGCAGAGGTCAGCTTCCGCTGCCTGCTTTATGAACTCATTCCAAATGGCAGCGTTGAATCCCATTTACATGGGGTTGACCGGGAAAACAACCCACTTGATTGGAGTGCTCGGACACTTGATTGGAGTGCTCGGATAAAGATAGCTCTTGGCGCTGCTCGTGGTCTGGCTTATCTGCATGAAGATTCAAGTCCTCATGTCATACACAGGGACTTCAAGTCTAGCAATATCTTGCTGGAAGATGATTTTACACCAAAAGTATCTGATTTTGGATTGGCTCGAGCAGCAACAGATGAGGAGAACAGACACATATCGACACGTGTCATGGGAACTTTTGGTTATGTGGCTCCGGAGTACGCAATGACTGGGCATCTACTTGTGAAGAGCGATGTTTACAGCTATGGTGTTGTTCTTCTTGAGCTTTTGACAGGAAGAAAGCCAGTAGATATGTCACAACCTCCTGGTGAAGAGAATCTCGTTGCATGGGCTCGCCCACTCCTCACAAGTAGAGAAGGATTGGAAGCAATAATAGATCCATCTCTCGGAACTGATGTGCCTTTTGATAGTGTGGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTACAACCAGAGGTATCAGATCGTCCTTTTATGGGTGAGGTTGTTCAAGCTTTAAAACTCGTATGTAATGAATGTGATGAAGCAAAAGAAGCAGGTTCAAGAAGTTCTAGCCAGGAGGGTTTATCTGTTGATTTGAATAATGTTTCTGGACAACTACCAGATAATTTCCAAAGCCAATTCTCAGCCACTAACTACGATTCTGGAGTTGATATCGAAAATGCGTTGTCAGCATCAGAGTTATTCAGCTCGTCAGCAAGATTTGGAAGGCAAGCTTCTGGATCATTTAGAAGACATTCTTATTCGGGTCCTCTGAGAACCGGAAGAAGCAGGCGGTTGTGGCAGATAATTAGAAAGCTTTCTGGTGGTAGTGTCAGTGAACATGGAAGAATGTTCAAGTTATGACCAGGTTCTGATTGA 3819 0.4496 MKMGLVLALILQLVKLYIIGFTVAFQGSEGSIISPSPAFVIHPRGETPGPIHHGQTWGSSAPSSPSDPDGFVLSPSPATLPVDPSPSEAPGLLPPRDLGRTISPSSPEAPNGPGSLLHPPVTLPLPKSAPTPQKIKGVEPSISPSPSPSTITLSPPYMAPPAPSTAPENVPPSIQPSPPQRKAPTVRPPVSTPIAPAPVAIPSSNLPKTSPVSQPIEHGSLPPKIDKRNASKSYTPEPVSPAPVAIPSTNLPKISPGRQPTENGSLPPNVHRKGANKGHTPEPISPAPVVFNLPKYSPVSQPTNNGSLPPTVHRRKSNSSHAWEPVSQAPVSIPPAILPKNSPLSQPTHHGSFPPNVHKRTANMGHAHTPGPVPPQSVASPPWKMENNQPVGHPILPELTPSILPAPVTSPTSPFPVHPPLIHPVIPAASPSKLPAPVVSPALTPSGSFNWKKGGEPVSAPLYKTPKPLPAIVHSPAQAPAAHTARQFRHAPEPMISSPKSPLNKEDHSPASSPSTTFYKHHHTRNTITSPAPASSYLVSPPSSKHQDQPIPPSLLPTSGRRHNAPSPMNTVQFHPPKVSPSRPSSKSPKMPVLPQVKALPPPPPNEDCLSTVCSEPYTNSPPGAPCRCVWPMKVGLRLGVSLYTFFPLVSELASEIASGVFMRQSQVRIMGANAASQQPDKTIALIDLVPLGEEFDNTTAFLTSERFWHKQVAIKASYFGDYDVLYVSYPGLPPSPPLPPSSITMIDGGPYSTDGNNGRTIKPLGVDIQKRPHKGGLSKGIIAIIALSVFLAVVLCFAAVWALFKHRDHVSQPTSTPRVLPSLTKAPGTAGSLAGGGRASASSSFRSSIAAYTGSAKTYSMNDIEKATDNFHDSRILGEGGFGRVYGGILEDGTKVAVKVLKREDHHGDREFLSEVEMLSRLHHRNLVKLIGICAEVSFRCLLYELIPNGSVESHLHGVDRENNPLDWSARTLDWSARIKIALGAARGLAYLHEDSSPHVIHRDFKSSNILLEDDFTPKVSDFGLARAATDEENRHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGEENLVAWARPLLTSREGLEAIIDPSLGTDVPFDSVAKVAAIASMCVQPEVSDRPFMGEVVQALKLVCNECDEAKEAGSRSSSQEGLSVDLNNVSGQLPDNFQSQFSATNYDSGVDIENALSASELFSSSARFGRQASGSFRRHSYSGPLRTGRSRRLWQIIRKLSGGSVSEHGRMFKLXPGSD 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 113 127 - -
Gabi2302g00004 1272 ProSitePatterns Protein kinases ATP-binding region signature. 878 900 IPR017441 GO:0005524
Gabi2302g00004 1272 CDD STKc_IRAK 878 1153 - -
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 462 604 - -
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 40 398 - -
Gabi2302g00004 1272 FunFam Receptor-like serine/threonine-protein kinase ALE2 948 1172 - -
Gabi2302g00004 1272 PANTHER OS01G0750732 PROTEIN 601 1179 - -
Gabi2302g00004 1272 Gene3D Phosphorylase Kinase; domain 1 844 947 - -
Gabi2302g00004 1272 ProSiteProfiles Protein kinase domain profile. 872 1155 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 252 266 - -
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 149 196 - -
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 53 70 - -
Gabi2302g00004 1272 Pfam Protein tyrosine and serine/threonine kinase 875 1152 IPR001245 GO:0004672|GO:0006468
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 296 326 - -
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 502 589 - -
Gabi2302g00004 1272 SUPERFAMILY Protein kinase-like (PK-like) 852 1152 IPR011009 -
Gabi2302g00004 1272 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1001 1013 IPR008271 GO:0004672|GO:0006468
Gabi2302g00004 1272 MobiDBLite consensus disorder prediction 815 838 - -
Gabi2302g00004 1272 FunFam receptor-like serine/threonine-protein kinase ALE2 845 947 - -
Gabi2302g00004 1272 Gene3D Transferase(Phosphotransferase) domain 1 948 1176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2302g00004 Gabi-Chr2302 113526 123235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2302g00004 363 1262 Receptor kinase-like Gene Family AT5G56890 54.679 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gabi2302g00004 PK_Tyr_Ser-Thr 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2302g00004 - - gmx:100802309 1738.78