Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2301g00017 ATGGCATCGCAAGCGAGAAAGAGAGTTGATGCCCTAGTTCGCGGCAAAGATGGCAGTGCCTTTGCTCAATGCGAAGAGTGTAAGAAGGATGTTCCGGTGGCACTCATCAGCATGCACAGTTGCAGTCTCGAAGCTAAAATCAAAATGAATCTCGAGGCTCAGGTTGTTGAACAGCCTGCTGAAGTCAAGAAGACAGAGAGGAAGAAACCTACGTGTAAAGAACCAAAGGCAAAACGGGCCAAAGTTGAGAAGGGGAAGAAGGTCAAGGATCCTAACATGCCCAAGCGTCCTCCCACAGCCTTCTTTCTCTTCTTGGATGGTTTTAGAAAAACTTTTAAGGAAGCAAATCCCGATTCTAAGGATGTTAAAAGGGTTGGTAAAGAGGCTGGTGAGAAGTGGAAGTCTATGACTGATGAAGAGAAGAAACCTTATTTCGATAAGTTTGTTGAACGCAAGGCAGAATACGAGAAGGCTATGGAAAGTTATAATGCTGCTGAAGATGAAGATCAAGAGGGGTCTGATAAGGAAGCCACTCCGGGAGAAGTAGAAGAGATAACTGATGAGGAGTAG 570 0.4526 MASQARKRVDALVRGKDGSAFAQCEECKKDVPVALISMHSCSLEAKIKMNLEAQVVEQPAEVKKTERKKPTCKEPKAKRAKVEKGKKVKDPNMPKRPPTAFFLFLDGFRKTFKEANPDSKDVKRVGKEAGEKWKSMTDEEKKPYFDKFVERKAEYEKAMESYNAAEDEDQEGSDKEATPGEVEEITDEE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2301g00017 189 CDD HMG-box_AtHMGB1-like 95 155 - -
Gabi2301g00017 189 Gene3D High mobility group box domain 89 165 IPR036910 -
Gabi2301g00017 189 SMART hmgende2 93 164 IPR009071 -
Gabi2301g00017 189 MobiDBLite consensus disorder prediction 62 96 - -
Gabi2301g00017 189 MobiDBLite consensus disorder prediction 118 137 - -
Gabi2301g00017 189 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 94 163 IPR009071 -
Gabi2301g00017 189 MobiDBLite consensus disorder prediction 62 93 - -
Gabi2301g00017 189 Pfam HMG (high mobility group) box 94 163 IPR009071 -
Gabi2301g00017 189 SUPERFAMILY HMG-box 85 164 IPR036910 -
Gabi2301g00017 189 MobiDBLite consensus disorder prediction 159 189 - -
Gabi2301g00017 189 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 5 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2301g00017 Gabi-Chr2301 133870 135212 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gabi2301g00017 HMG_box 1.1e-21 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2301g00017 K25507 - gmx:100810345 286.96