Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2301g00016 ATGCATGACAACGGGGACCATATTCATCATTTCATCAACTCAACTTGGAGACTCTGTTCTCTTCTAGGTGGTTGGGTTTCTGGTTTAATATCGAAACCTTATACAAAAGTGGTTGGCTCAGCATTTAATGGTTCTCTTTCTAGGTTGGCTGAGGAAAGAGAAAATCATTCTTTAGAGTTCATGGATGCGTGTATATATATTAGTTCATCGGATGATGACTTGGAGGAGATAGAAGATCCAAAGAGGAGTCTCCCACGTTGGGCTGCTAGTGAAAGGAATTCAGATTATGGTGGGTGGCCTAGGCAGGGTAGTTCTTCAAGAGGGGCAAATACTTCAAACACGAGCTCTTCTAACATTAATAATCATTCACAAGTCAGGCCTCATACTCAACCTGTGTCCAGCAACAATACACTGAATCACAGAGTTGCACGGAGAGATGAAACTTCCTATCATACCCAGAATGGAAACACAAGTCAGCATCAGACAGTTAATTCCCGAATTTCTAACATGTATGGTGCCGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCATCTGCAGCAAGGGCTCTTCCATCTTCATCACTTGCCCCAGACAGCAGATTAAGCAACTTAAAAGATAACATGAGCAGCAGTCAGCTTCATGATGCATATAGGAATCGTCGCCATGGAGTAGGACCTAGCACATCCAGTGGCAAAGGCTTCATTCGTGACAATTTTAACAGGGGCAATGATGAAGATCGTTTCATGCATCAAAATGGTGGGATTAGGATGCTTCCTTCATCTTTGATGCTTGGAAAGGCTATAGCTCCACAGTTTGCTAGTTCTAGTGAATCTGCAAACCGTTCTGGAGCAGGAGATGAAAGGGCTCCTGGAAATGATGAAAGACTAATTTATGAGGCAGCGTTACAGGAACTTAATCAACCAAAAGCAGAAGCTGAATTACCTGATGGTCTATTGTCTGTCTCTCTTCTAAGACATCAGAAAATTGCATTGGCTTGGATGCATCAGAAGGAAACCAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATTGCCCTCATTCTAGTGCAGAGGTCTTTGCAGTCAAAATCGAAAACAGATGATACATGCAATCATAAAACAGAAGCTTTGAATTTGGATGACGATGATGATAATTGTAGTGCTGATGTGGAAAAGCTTAAAAAGAATGAAGAATCTGATGATATAAAACCTATTACAGAACCAAGTAGTTCAACACGGGCACCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTGTGCCCTGCAAGTGTTCTTAGACAGTGGGCCAGGGAACTTGATGATAAAGTTGGAGAAGAAAAGCTTTCTGTTTTGATTTATCATGGGGGCAATAGGACTAAGGATCCCGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACGCTATTGTGACTAATGAAGTTCCAAAGCAACCGATAGTTGAGGAGGGTGATGTTGATGAAAAAAATGGGGAAAAATTTGGGTTGTCCTCTGAGTTTTCTGTTGGTAAAAAGAGGAAAAAGTCATATGATGGAAGTAAGAGGAGTAAAAAAGGTAGAAAGGGAATTGAGAATTCTTCTATCGATTGTTCTTCTGGCCCTCTCGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGTAGCCTTAGGGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAGGTATGATCCTTATGCCGTGTATAAATCATTCTACAATACAATAAAAGTTCAAATATCCAGAAATTCTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGGACAAAAGGAACTTTGATTGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTCAGTTGAGTAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATTATGATTCTGATCCTGTTGGGAAAGATTCTGTAGAAATGGCAAAAAGGCTTCCGAGGGAGATGCTGGTTAATCTATTTAATTGTTTGGAAACAACATTTGCAATATGTCACGTTTGCCATGATCCACCTGAAGACCCTGTTATCACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCGGAATATTTGACAGGTGATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGATGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATGATCTTGGTGATAGTAGTTCTGCAAATTTGCATCTTATTGATTATTCACTAGTGCAGCAGATGGACTAG 2589 0.4067 MHDNGDHIHHFINSTWRLCSLLGGWVSGLISKPYTKVVGSAFNGSLSRLAEERENHSLEFMDACIYISSSDDDLEEIEDPKRSLPRWAASERNSDYGGWPRQGSSSRGANTSNTSSSNINNHSQVRPHTQPVSSNNTLNHRVARRDETSYHTQNGNTSQHQTVNSRISNMYGADYEKMSSQQAFKRTLPSSLQPSAARALPSSSLAPDSRLSNLKDNMSSSQLHDAYRNRRHGVGPSTSSGKGFIRDNFNRGNDEDRFMHQNGGIRMLPSSLMLGKAIAPQFASSSESANRSGAGDERAPGNDERLIYEAALQELNQPKAEAELPDGLLSVSLLRHQKIALAWMHQKETRSLHCLGGILADDQGLGKTISMIALILVQRSLQSKSKTDDTCNHKTEALNLDDDDDNCSADVEKLKKNEESDDIKPITEPSSSTRAPGRKRPAAGTLVVCPASVLRQWARELDDKVGEEKLSVLIYHGGNRTKDPVELAKFDVVLTTYAIVTNEVPKQPIVEEGDVDEKNGEKFGLSSEFSVGKKRKKSYDGSKRSKKGRKGIENSSIDCSSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVQISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIQLSKVDFSIEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKDSVEMAKRLPREMLVNLFNCLETTFAICHVCHDPPEDPVITMCGHVFCYQCVSEYLTGDDNMCPAVDCKEQIGDDLVFSKATLRSCISDDDLGDSSSANLHLIDYSLVQQMD 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2301g00016 862 ProSitePatterns Zinc finger RING-type signature. 793 802 IPR017907 -
Gabi2301g00016 862 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 348 624 IPR014001 -
Gabi2301g00016 862 SUPERFAMILY RING/U-box 776 828 - -
Gabi2301g00016 862 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 426 513 - -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 97 138 - -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 414 442 - -
Gabi2301g00016 862 Gene3D - 527 673 IPR038718 -
Gabi2301g00016 862 Gene3D - 306 393 IPR038718 -
Gabi2301g00016 862 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 542 674 - -
Gabi2301g00016 862 SMART ring_2 778 816 IPR001841 -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 536 558 - -
Gabi2301g00016 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 662 IPR027417 -
Gabi2301g00016 862 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 772 828 IPR013083 -
Gabi2301g00016 862 SMART ultradead3 329 641 IPR014001 -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 76 138 - -
Gabi2301g00016 862 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 105 833 - -
Gabi2301g00016 862 ProSiteProfiles Zinc finger RING-type profile. 778 814 IPR001841 -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 182 249 - -
Gabi2301g00016 862 Gene3D - 428 515 IPR038718 -
Gabi2301g00016 862 MobiDBLite consensus disorder prediction 182 224 - -
Gabi2301g00016 862 Pfam SNF2-related domain 351 739 IPR000330 GO:0005524|GO:0140658
Gabi2301g00016 862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 671 740 IPR027417 -
Gabi2301g00016 862 Pfam Zinc finger, C3HC4 type (RING finger) 778 814 - -
Gabi2301g00016 862 CDD DEXDc_SHPRH-like 333 662 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2301g00016 Gabi-Chr2301 81760 96891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2301g00016 61 847 RAD5 or RAD16-like Gene Family AT1G50410 57.928 0.0 834
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2301g00016 SNF2_N 2.7e-68 CL0023