Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2301g00015 ATGGATGCGTGTATATATATTAGTTCATCGGATGATGACTTGGAGGAGATAGAAGATCCAAAGAGGAGTCTCCCACGTTGGGCTGCTAGTGAAAGGAATTCAGATTATGGTGGGTGGCCTAGGCAGGGTAGTTCTTCAAGAGGGGCAAATACTTCAAACACGAGCTCTTCTAACATTAATAATCATTCACAAGTCAGGCCTCATACTCAACCTGTGTCCAGCAACAATACACTGAATCACAGAGTTGCACGGAGAGATGAAACTTCCTATCATACCCAGAATGGAAACACAAGTCAGCATCAGACAGTTAATTCCCGAATTTCTAACATGTATGGTGCCGATTATGAGAAAATGTCATCTCAACAAGCTTTCAAGAGGACCCTTCCGTCATCTCTTCAACCATCTGCAGCAAGGGCTCTTCCATCTTCATCACTTGCCCCAGACAGCAGATTAAGCAACTTAAAAGATAACATGAGCAGCAGTCAGCTTCATGATGCATATAGGAATCGTCGCCATGGAGTAGGACCTAGCACATCCAGTGGCAAAGGCTTCATTCGTGACAATTTTAACAGGGGCAATGATGAAGATCGTTTCATGCATCAAAATGGTGGGATTAGGATGCTTCCTTCATCTTTGATGCTTGGAAAGGCTATAGCTCCACAGTTTGCTAGTTCTAGTGAATCTGCAAACCGTTCTGGAGCAGGAGATGAAAGGGCTCCTGGAAATGATGAAAGACTAATTTATGAGGCAGCGTTACAGGAACTTAATCAACCAAAAGCAGAAGCTGAATTACCTGATGGTCTATTGTCTGTCTCTCTTCTAAGACATCAGAAAATTGCATTGGCTTGGATGCATCAGAAGGAAACCAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATTGCCCTCATTCTAGTGCAGAGGTCTTTGCAGTCAAAATCGAAAACAGATGATACATGCAATCATAAAACAGAAGCTTTGAATTTGGATGACGATGATGATAATTGTAGTGCTGATGTGGAAAAGCTTAAAAAGAATGAAGAATCTGATGATATAAAACCTATTACAGAACCAAGTAGTTCAACACGGGCACCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTGTGCCCTGCAAGTGTTCTTAGACAGTGGGCCAGGGAACTTGATGATAAAGTTGGAGAAGAAAAGCTTTCTGTTTTGATTTATCATGGGGGCAATAGGACTAAGGATCCCGTTGAACTTGCAAAATTTGATGTGGTTCTCACAACATACGCTATTGTGACTAATGAAGTTCCAAAGCAACCGATAGTTGAGGAGGGTGATGTTGATGAAAAAAATGGGGAAAAATTTGGGTTGTCCTCTGAGTTTTCTGTTGGTAAAAAGAGGAAAAAGTCATATGATGGAAGTAAGAGGAGTAAAAAAGGTAGAAAGGGAATTGAGAATTCTTCTATCGATTGTTCTTCTGGCCCTCTCGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGCTGTAGCCTTAGGGCCAAAAGAAGGTGGTGTTTATCTGGAACACCTATTCAAAATACTATTGATGATTTATATAGCTACTTTAGGTTCCTGAGGTATGATCCTTATGCCGTGTATAAATCATTCTACAATACAATAAAAGTTCAAATATCCAGAAATTCTATTCAAGGTTACAAGAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGGACAAAAGGAACTTTGATTGATGGGAAGCCAATAATCAATTTACCTCCTAAAACAATTCAGTTGAGTAAGGTGGATTTCTCCATTGAGGAGCGGGCCTTCTACACCAAGTTGGAAGCAGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTGAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCACCCACTTCTTGTTAAAGATTATGATTCTGATCCTGTTGGGAAAGATTCTGTAGAAATGGCAAAAAGGCTTCCGAGGGAGATGCTGGTTAATCTATTTAATTGTTTGGAAACAACATTTGCAATATGTCACGTTTGCCATGATCCACCTGAAGACCCTGTTATCACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCGGAATATTTGACAGGTGATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGATGATCTTGTTTTCTCCAAAGCTACTTTGAGGAGTTGCATCTCTGATGATGATCTTGGTGATAGTAGTTCTGCAAATTTGCATCTTATTGATTATTCACTAGTGCAGCAGAGTGAGTATAATTCATCTAAAATCAAAGCCGTCCTTGAGGTTCTACAGACAAATTGTAAATTGATGACCGCAACTGAAGGACCAATAAAAGCTATAGTTTTTTCCCAGTGGACTAGCATGTTGGACTTAGTTGAGATGTCGGTGAAACAATCTGGTCTACAATACAGGAGGCTTGATGGTAGGATGACTCTGGTTGCGAGGGACAAAGGCGTTAAGGATTTTAATACTGATCCTGAGATAACTGTTATGCTGATGTCGCTAAAAGCAGGAAACCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTATTGGATCCTTGGTGGAATCCAACGACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGGCAGACTCGTCCTGTTACAGTGACACGGGTTACTATAAAAGATACGGTTGAAGATAGAATACTGAATCTTCAGGAAGACAAGAGAAAAATGGTTGCATCTGCTTTTGGTGAAGACCATGCAGGCAGTTCTACAACTCGCCTTACAGTGGATGATCTGAAATATCTTTTCATGGTCTAG 2952 0.4079 MDACIYISSSDDDLEEIEDPKRSLPRWAASERNSDYGGWPRQGSSSRGANTSNTSSSNINNHSQVRPHTQPVSSNNTLNHRVARRDETSYHTQNGNTSQHQTVNSRISNMYGADYEKMSSQQAFKRTLPSSLQPSAARALPSSSLAPDSRLSNLKDNMSSSQLHDAYRNRRHGVGPSTSSGKGFIRDNFNRGNDEDRFMHQNGGIRMLPSSLMLGKAIAPQFASSSESANRSGAGDERAPGNDERLIYEAALQELNQPKAEAELPDGLLSVSLLRHQKIALAWMHQKETRSLHCLGGILADDQGLGKTISMIALILVQRSLQSKSKTDDTCNHKTEALNLDDDDDNCSADVEKLKKNEESDDIKPITEPSSSTRAPGRKRPAAGTLVVCPASVLRQWARELDDKVGEEKLSVLIYHGGNRTKDPVELAKFDVVLTTYAIVTNEVPKQPIVEEGDVDEKNGEKFGLSSEFSVGKKRKKSYDGSKRSKKGRKGIENSSIDCSSGPLAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYNTIKVQISRNSIQGYKKLQAVLRAIMLRRTKGTLIDGKPIINLPPKTIQLSKVDFSIEERAFYTKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDPVGKDSVEMAKRLPREMLVNLFNCLETTFAICHVCHDPPEDPVITMCGHVFCYQCVSEYLTGDDNMCPAVDCKEQIGDDLVFSKATLRSCISDDDLGDSSSANLHLIDYSLVQQSEYNSSKIKAVLEVLQTNCKLMTATEGPIKAIVFSQWTSMLDLVEMSVKQSGLQYRRLDGRMTLVARDKGVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDPWWNPTTEDQAIDRAHRIGQTRPVTVTRVTIKDTVEDRILNLQEDKRKMVASAFGEDHAGSSTTRLTVDDLKYLFMV 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2301g00015 983 Gene3D - 368 455 IPR038718 -
Gabi2301g00015 983 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 288 564 IPR014001 -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 476 498 - -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 37 78 - -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 1 78 - -
Gabi2301g00015 983 Pfam SNF2-related domain 291 679 IPR000330 GO:0005524|GO:0140658
Gabi2301g00015 983 SMART helicmild6 842 925 IPR001650 -
Gabi2301g00015 983 Pfam Zinc finger, C3HC4 type (RING finger) 718 754 - -
Gabi2301g00015 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 768 IPR013083 -
Gabi2301g00015 983 Pfam Helicase conserved C-terminal domain 819 925 IPR001650 -
Gabi2301g00015 983 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 807 978 IPR001650 -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 354 382 - -
Gabi2301g00015 983 SMART ultradead3 269 581 IPR014001 -
Gabi2301g00015 983 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 366 453 - -
Gabi2301g00015 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 982 IPR027417 -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 122 189 - -
Gabi2301g00015 983 Gene3D - 617 982 IPR027417 -
Gabi2301g00015 983 SUPERFAMILY RING/U-box 716 768 - -
Gabi2301g00015 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 254 602 IPR027417 -
Gabi2301g00015 983 MobiDBLite consensus disorder prediction 122 164 - -
Gabi2301g00015 983 ProSiteProfiles Zinc finger RING-type profile. 718 754 IPR001841 -
Gabi2301g00015 983 SMART ring_2 718 756 IPR001841 -
Gabi2301g00015 983 CDD DEXDc_SHPRH-like 273 602 - -
Gabi2301g00015 983 Gene3D - 467 613 IPR038718 -
Gabi2301g00015 983 Gene3D - 246 333 IPR038718 -
Gabi2301g00015 983 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 48 982 - -
Gabi2301g00015 983 CDD SF2_C_SNF 805 934 - -
Gabi2301g00015 983 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 482 614 - -
Gabi2301g00015 983 ProSitePatterns Zinc finger RING-type signature. 733 742 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2301g00015 Gabi-Chr2301 80300 95422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2301g00015 1 883 RAD5 or RAD16-like Gene Family AT1G50410 54.701 0.0 920
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gabi2301g00015 SNF2_N 3.1e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2301g00015 - - gmx:100795142 1581.23