LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi22g00011	ATGGACATGCTTTCCCTTAGAGAGCAACATGCACGTACACTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTTTATGTAGACAAGGGGAAAGCATTTCTGTTTGCTGAAGCTGGTGTTAGTGTTGATGAACATCGTGACTCTAATTCACCTGTTAGTTCTTCAGTAATGTGCGAAATCTGCATAGAGGATGTTCCTGGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACAACTGTTGGACAGAGCATTTTCTTGTCAAGATAAATGAGGGTCAAAGTAAACGAATTAGATGCATGGCACACAAATGCTATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTGCTCAGTAGAAAGCACCCTGATATGGCAGAGAAATACGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCTAGCACGCCTCATTGTGGGAATGCAATACGCATTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTTAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACGAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGCGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGGCGAGACCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGACCATGAAAAAACATCTGAACGGGCAAAGCGGGATCTATATCGATATATGCACTATCATAACCGTTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTATTCAGATCCAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGTCAGAAGCTCAAAGGGAAATAAAACAGAACTTGTTTGAGGATCAACAGCAGCAACTTGAGGCAAATGTAGAAAAGCTCTCTAAAATTTTGGAGGAGCCATTTGAAACCTTTTCAGATGATAAGGTTATGGAGATAAGGATGCAGATAATCAATCTGTCGACAATTATCGACAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATATTGGCATGCACAGTATAGCTCCATATAAGTCAAAGGGTATAGAGAGGGCATCAGAACTTTCAGTTTGTTGGAGCAATAAAGCAAATAATACTGATAAGGACAGTGGGTTAGATCGTGTAGGTGGAACGGCAGAAGTTGATCGGCCTTCTGGATCGGGGAGTTCAGATGAGGGTGGATGTTCTTCTCGTAAGCGTGCTAGAAAAGAGGGTCTTGGAGGTGGTGGTGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGCTTGTAGACAGAAATTGA	1602	0.4095	MDMLSLREQHARTLLIFHRWDVEKLFAVYVDKGKAFLFAEAGVSVDEHRDSNSPVSSSVMCEICIEDVPGDEATRMDCGHCFCNNCWTEHFLVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRIEDDELCEVECSCGLQFCFSCLLEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKDHEKTSERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVMEIRMQIINLSTIIDKLCQKMYECIENDLLGSLHIGMHSIAPYKSKGIERASELSVCWSNKANNTDKDSGLDRVGGTAEVDRPSGSGSSDEGGCSSRKRARKEGLGGGGGGGFFDLNLPAELVDRN	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi22g00011	533	SUPERFAMILY	RING/U-box	132	200	-	-
	Gabi22g00011	533	CDD	RING-HC_RBR_TRIAD1	59	110	-	-
	Gabi22g00011	533	MobiDBLite	consensus disorder prediction	475	533	-	-
	Gabi22g00011	533	SUPERFAMILY	RING/U-box	57	144	-	-
	Gabi22g00011	533	FunFam	RBR-type E3 ubiquitin transferase	190	437	-	-
	Gabi22g00011	533	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	55	147	IPR013083	-
	Gabi22g00011	533	ProSiteProfiles	TRIAD supradomain profile.	57	271	IPR044066	-
	Gabi22g00011	533	SUPERFAMILY	RING/U-box	202	259	-	-
	Gabi22g00011	533	FunFam	RBR-type E3 ubiquitin transferase	55	146	-	-
	Gabi22g00011	533	CDD	Rcat_RBR_ARI1-like	215	268	-	-
	Gabi22g00011	533	Gene3D	-	190	437	-	-
	Gabi22g00011	533	CDD	BRcat_RBR_ANKIB1	139	203	-	-
	Gabi22g00011	533	ProSiteProfiles	Zinc finger RING-type profile.	61	109	IPR001841	-
	Gabi22g00011	533	SMART	ibrneu5	132	194	IPR002867	GO:0008270
	Gabi22g00011	533	SMART	ibrneu5	202	267	IPR002867	GO:0008270
	Gabi22g00011	533	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	51	337	IPR031127	GO:0004842\|GO:0016567
	Gabi22g00011	533	Pfam	IBR domain, a half RING-finger domain	132	194	IPR002867	GO:0008270
	Gabi22g00011	533	Pfam	Ariadne domain	271	533	IPR045840	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi22g00011	Gabi-Chr22	61680	70640	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi22g00011	1	461	ARIADNE family	AT2G16090	74.624	0.0	733

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi22g00011	K11968		-	gmx:100783343	980.319