Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi22g00010 ATGGACGATTATGCGAGTAGCGACGACGAATATCATTACTCCTCCGATCAGGATGATTCCATCGATGCCTTCGAAAACGACGACCAAGATTACCCCTTGCTCAATTCCAAGGGTCCCACTACTCAGGTGATTACAAAGGAATCACTGCTCGCTGCACAGAAAGAGGATTTGCGTAGAGTGATGGACATGCTTTCCCTTAGAGAGCAACATGCACGTACACTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTTTATGTAGACAAGGGGAAAGCATTTCTGTTTGCTGAAGCTGGTGTTAGTGTTGATGAACATCGTGACTCTAATTCACCTGTTAGTTCTTCAGTAATGTGCGAAATCTGCATAGAGGATGTTCCTGGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAACAACTGTTGGACAGAGCATTTTCTTGTCAAGATAAATGAGGGTCAAAGTAAACGAATTAGATGCATGGCACACAAATGCTATTCCATTTGTGATGAAGCTGTTGTAAGAACTCTGCTCAGTAGAAAGCACCCTGATATGGCAGAGAAATACGAACGCTTTCTTCTTGAATCCTACATTGAAGACAATAAGAGAGTTAAATGGTGTCCTAGCACGCCTCATTGTGGGAATGCAATACGCATTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGTTTACAATTTTGTTTTAGTTGCTTGTTAGAAGCACACTCCCCTTGTTCATGTTTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACGAAGCCTTGTCCAAAGTGCCACAAACCGGTGGAGAAGAATGGCGGTTGTAACTTGGTTAGCTGTATCTGTGGCCAAGCATTTTGTTGGCTGTGTGGTGGAGCTACTGGGCGAGACCATACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAAGACCATGAAAAAACATCTGAACGGGCAAAGCGGGATCTATATCGATATATGCACTATCATAACCGTTATAAAGCTCACACAGACTCCTTTAAGCTTGAAAGTAAACTGAAAGAGACTATACAAGGGAAGATTGCTATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGACTCTCCAGACTATTCAGATCCAGGCGTGTCCTATCATATTCATATGCATTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGATGAAATGTCAGAAGCTCAAAGGGAAATAAAACAGAACTTGTTTGAGGATCAACAGCAGCAACTTGAGGCAAATGTAGAAAAGCTCTCTAAAATTTTGGAGGAGCCATTTGAAACCTTTTCAGATGATAAGGTTATGGAGATAAGGATGCAGATAATCAATCTGTCGACAATTATCGACAAACTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATATTGGCATGCACAGTATAGCTCCATATAAGTCAAAGGGTATAGAGAGGGCATCAGAACTTTCAGTTTGTTGGAGCAATAAAGCAAATAATACTGGTAAATACTTTTTTCCTTTTGACTGTGGAACGGCAGAAGTTGATCGGCCTTCTGGATCGGGGAGTTCAGATGAGGGTGGATGTTCTTCTCGTAAGCGTGCTAGAAAAGAGGGTCTTGGAGGTGGTGGTGGTGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGCTTGTAGACAGAAATTGA 1779 0.4137 MDDYASSDDEYHYSSDQDDSIDAFENDDQDYPLLNSKGPTTQVITKESLLAAQKEDLRRVMDMLSLREQHARTLLIFHRWDVEKLFAVYVDKGKAFLFAEAGVSVDEHRDSNSPVSSSVMCEICIEDVPGDEATRMDCGHCFCNNCWTEHFLVKINEGQSKRIRCMAHKCYSICDEAVVRTLLSRKHPDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRIEDDELCEVECSCGLQFCFSCLLEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKDHEKTSERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKDEMSEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVMEIRMQIINLSTIIDKLCQKMYECIENDLLGSLHIGMHSIAPYKSKGIERASELSVCWSNKANNTGKYFFPFDCGTAEVDRPSGSGSSDEGGCSSRKRARKEGLGGGGGGGFFDLNLPAELVDRN 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi22g00010 592 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 48 396 IPR031127 GO:0004842|GO:0016567
Gabi22g00010 592 FunFam RBR-type E3 ubiquitin transferase 115 206 - -
Gabi22g00010 592 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 207 IPR013083 -
Gabi22g00010 592 Pfam Ariadne domain 331 592 IPR045840 -
Gabi22g00010 592 FunFam RBR-type E3 ubiquitin transferase 250 497 - -
Gabi22g00010 592 SMART ibrneu5 262 327 IPR002867 GO:0008270
Gabi22g00010 592 SMART ibrneu5 192 254 IPR002867 GO:0008270
Gabi22g00010 592 CDD Rcat_RBR_ARI1-like 275 328 - -
Gabi22g00010 592 ProSiteProfiles Zinc finger RING-type profile. 121 169 IPR001841 -
Gabi22g00010 592 SUPERFAMILY RING/U-box 262 319 - -
Gabi22g00010 592 MobiDBLite consensus disorder prediction 546 592 - -
Gabi22g00010 592 SUPERFAMILY RING/U-box 192 260 - -
Gabi22g00010 592 SUPERFAMILY RING/U-box 117 204 - -
Gabi22g00010 592 MobiDBLite consensus disorder prediction 1 38 - -
Gabi22g00010 592 CDD BRcat_RBR_ANKIB1 199 263 - -
Gabi22g00010 592 Gene3D - 250 497 - -
Gabi22g00010 592 ProSiteProfiles TRIAD supradomain profile. 117 331 IPR044066 -
Gabi22g00010 592 CDD RING-HC_RBR_TRIAD1 119 170 - -
Gabi22g00010 592 Pfam IBR domain, a half RING-finger domain 192 254 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi22g00010 Gabi-Chr22 61680 71417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi22g00010 61 544 ARIADNE family AT2G16090 72.336 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi22g00010 K11968 - gmx:100783343 1075.46