Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2299g00019 ATGGCCACATCTAATTCTTCATTCATAAAAGAGGAACGTGAGGCTTTGTACAAAACCCATTGGTGGAGTGACCAACAGAGCTCAAATCCCTGTACTTGGCCTGGTATTTTATGCAATGAAGCTGGAAGTATTACAGAGATTTCTAAAACTCGTAATTCTTGGGGGGTTAAGCTATATCTTCAGGACCTCAACCTCACTGCATTGCCCAATTTAGTAGTTCTAAATCTTAGTTCAATGGAGCTTTACGGTGGCATCCCTACAGAAATTAGCGCTCTTACCAAACTCACCTCTATTGACTTGTCCTCTAATTGTCTTACAGGCAAGTTGCCTAGTTCACTTTCAAATCTCACTAACCTTGTGATGCTTGATGTTTCTAATAATTTTCTTGAAGGTGCGTTGCCTACTACACTTTCAAATCTCACTCAACTTGTGATGCTTGATGTTTCTGACAATTCTCTGTTCGGTGTGCTGCCTCCTCAGTTTAGCAATCTGAAAAAGCTTGTCACATTGAATTTAAGCGAAAATGGCTTCAATGGGTCCTTACTCACAACATTTGGTCACATGACTAGTCTCACTCATCTTGTTTTGTCCTCTAATTCTCTAGAAGGTGAGTTGCCTAGTTCACTTGCAAATCTCACTCAACTTGTGATGCTTGATGTTTCTGACAATTCTCTGTTCGGTGTGCTGCCTCCTCAATTTAGCAATTTGAAAAAACTTGTCACATTGAATTTAAGCGCAAATGGCTTTAATGGGTCCTTACCCACAATATTTGGTCACATGACTAGTCTCACTCATCTTGTTTTGTCCTCTAATTCTCTAGAAGGTGAGTTGCCTAGTTCACTTGCAAATCTCACTCAACTTGTGATGCTTGATGTTTCAAACAATTCTCTATTCGGTGTGATACCTCCTCAGTTTAGCAATTTGAAAAAGCTTGTCACATTGAATTTGAGCAGAAATGGCTTTAATGGGTCCATACCCACAACATTTGGTCACATGACTAGTCTCACCAAACTTGATCTATCCACTAACAATTTTAGTGGTGAGCTGCCGAACACGCTTGCGAATCTCCCGCTAAAGAAGCTTGTGGCTTCGGCAAATGCTTTCAGTGGTTTCATTTTCAATGACATAGGGAAGCTAACAAATTTGTCCACTTTAGATTTGAGTTCCAATTGCCTGATTGGTCCAATTCCTACGGGAATAGGAAACATAAAGAATTTGTTCACTTTAAAGCTTCGTTCCAACAAGTTAAATGGTTCGATTCCAAACAAAATTGGAAGTTTGAAGCATTTGACTAGTTTGGATCTTGGCCATAACGAACTCGGAGGTCGAATTCCAAAGAGTTTAGGCTATTTGAAAGATTTGCACAACCTGTTTCTTGATTCTAACCAAATCAGTGGTTCCATCCCTTTGGAATTATTGAATCTTAATAACTTAGTACAGTTAGATCTTTCTAATAACTCACTCATTGGCCCAATCCCTCCAATAAATAGCAATTTATCAAGATTGGAAAGTCTTTCCCTAAGCCTGAACAAAATCAATGGTTCAATTCCCTCAAAGATAGGAAATTTTGTCACCAATCTTTTATATCTAGATTTGGCTGCAAATAACCTATGTGGTTCAATTCCTTTGTCTCTGTACAAGTTAGCTTATTTGATGAATTTAACTCTTCATTCAAATCAAATAAGTGGTGTCATACACCCCACAATTCAAAATTTAGAATATTTGAGGGTACTAGATATGTCTAATAACAATCTATCTGGTAGCATACCGTCAGAAGTTTTTCAAATGACTTCTCTATATATTCTTGATCTTTCATCCAATCAATTATCTGGCTCACTGCCGCATGATTGTAGGGGATACCTTTCTGATCTAAACCTCTCTCACAACAAGTTAAATGGAAGTATTCCTTCAGTGTTTGGTCTCATAACAAAGTCATTGCATCTTAGTTACAATAATCTCGGTGGCAATATTCCTATGGAGCTTTGTTACCTTGAAAGCCTCAATTTGTCATACAATTCCCTTAGTGGCAGTATCTCTGAAGCAATTTGTTGTGAATTTTCTCTGGACACATTCATTGGTAATCAGGGATTAATTGCTACATGCTCTTACGAGCCATCCCCCAGCCCCTCATCTGGTCATATTCAGAGTGGTCGTTCCCTGAAGATCATTCTTCCTGTCACTACTTTTCTTGTTCTCCTATCTATAGGGGCCTTGCTTGTTTATCGATTCATGGCTAGGAAGACCAAATTCCAAAAGAAACAAGCAAAGAATGGAGACTTGTTTTCCATATGGAATTATGATGGTAAAATTGCATTTGAAGATATCATTGAAGCAACAGAGGACTTTCATATCAAGTATTGCATTGGCACAGGGGCTTATGGAAGTGTTTACAAAGCACAACTTCCCAGTGGTAAAATTGTTGCCTTGAAGAAACTACACCGATTGGAATCTCAAAACCCATCTTTTGACAAGTGTTTCCGAAATGAAGTCCAAGTGCTGACAAATATCCGTCATCGGAACATTGTTAAGCTTTATGGATTTTGCTTGCACAATCGATGTATGTTTTTAATCTATGAATACATTGAAAGGGGAAGCTTATTTTATGTCCTGAGGAATGATGAGGAAGCTACAGAGTTGAATTGGAGCAAGCGAGTGAATATTGTTAAAGGGATAGCACATGCTTTGGCTTATCTGCATCATGATTGTACACCAACAATTGTTCACCGAGATATTACAAGTAGCAATGTTTTGTTGAACTCGGAATTCGAAGCATTTCTTTCAGATTTTGGAATAGCTAGACTCATTGATCCTGACTCTTCTAATCAAACTTTGATAGCCGGTACATATGGATATATTGCTCCAGAACTGGCATACACATTAACTTTGACAGAAAAATGTGATGTGTATAGTTTTGGTGTGGTAGTAATGGAAATAGTGATGGGAAAGCATCCGGGAGACATAATTTCTTCTTGGACAAAGTCATATGCTGAAAAGATGATTTTGAAAGATATATTGGACTCGCGTCTAGGTGTTCCCCGAGCTCGGAAAGATATTGAAGATGTAGTTCTTGTTGCCACACTAGCCTTACAATGCCTTCATTCAAACCCCAAGTGTCGACCATCAATGCAACAAGTGGCTAATGAACTTTCTGTCTCAAGACATCCTCTCCCACTGCCCTTCCATGATATTTCAATCTACCAGCTGAAGGATCAAGAGATTTATGTTCTGAACAAAGTATGA 3240 0.3852 MATSNSSFIKEEREALYKTHWWSDQQSSNPCTWPGILCNEAGSITEISKTRNSWGVKLYLQDLNLTALPNLVVLNLSSMELYGGIPTEISALTKLTSIDLSSNCLTGKLPSSLSNLTNLVMLDVSNNFLEGALPTTLSNLTQLVMLDVSDNSLFGVLPPQFSNLKKLVTLNLSENGFNGSLLTTFGHMTSLTHLVLSSNSLEGELPSSLANLTQLVMLDVSDNSLFGVLPPQFSNLKKLVTLNLSANGFNGSLPTIFGHMTSLTHLVLSSNSLEGELPSSLANLTQLVMLDVSNNSLFGVIPPQFSNLKKLVTLNLSRNGFNGSIPTTFGHMTSLTKLDLSTNNFSGELPNTLANLPLKKLVASANAFSGFIFNDIGKLTNLSTLDLSSNCLIGPIPTGIGNIKNLFTLKLRSNKLNGSIPNKIGSLKHLTSLDLGHNELGGRIPKSLGYLKDLHNLFLDSNQISGSIPLELLNLNNLVQLDLSNNSLIGPIPPINSNLSRLESLSLSLNKINGSIPSKIGNFVTNLLYLDLAANNLCGSIPLSLYKLAYLMNLTLHSNQISGVIHPTIQNLEYLRVLDMSNNNLSGSIPSEVFQMTSLYILDLSSNQLSGSLPHDCRGYLSDLNLSHNKLNGSIPSVFGLITKSLHLSYNNLGGNIPMELCYLESLNLSYNSLSGSISEAICCEFSLDTFIGNQGLIATCSYEPSPSPSSGHIQSGRSLKIILPVTTFLVLLSIGALLVYRFMARKTKFQKKQAKNGDLFSIWNYDGKIAFEDIIEATEDFHIKYCIGTGAYGSVYKAQLPSGKIVALKKLHRLESQNPSFDKCFRNEVQVLTNIRHRNIVKLYGFCLHNRCMFLIYEYIERGSLFYVLRNDEEATELNWSKRVNIVKGIAHALAYLHHDCTPTIVHRDITSSNVLLNSEFEAFLSDFGIARLIDPDSSNQTLIAGTYGYIAPELAYTLTLTEKCDVYSFGVVVMEIVMGKHPGDIISSWTKSYAEKMILKDILDSRLGVPRARKDIEDVVLVATLALQCLHSNPKCRPSMQQVANELSVSRHPLPLPFHDISIYQLKDQEIYVLNKV 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2299g00019 1079 FunFam Leucine-rich receptor-like protein kinase family protein 255 351 - -
Gabi2299g00019 1079 FunFam Piriformospora indica-insensitive protein 2 396 491 - -
Gabi2299g00019 1079 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 492 708 - -
Gabi2299g00019 1079 FunFam Leucine-rich repeat receptor protein kinase EMS1 159 254 - -
Gabi2299g00019 1079 Gene3D Transferase(Phosphotransferase) domain 1 861 1055 - -
Gabi2299g00019 1079 Gene3D Ribonuclease Inhibitor 170 441 IPR032675 -
Gabi2299g00019 1079 CDD STKc_IRAK 788 1049 - -
Gabi2299g00019 1079 SMART LRR_typ_2 260 283 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 308 331 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 427 451 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 332 355 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 524 548 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 188 211 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 164 187 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 116 139 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 212 235 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 597 619 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 92 115 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 140 163 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 284 307 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 572 596 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 499 523 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 661 685 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 379 403 IPR003591 -
Gabi2299g00019 1079 SMART LRR_typ_2 236 259 IPR003591 -
Gabi2299g00019 1079 Pfam Protein kinase domain 783 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00019 1079 SUPERFAMILY Protein kinase-like (PK-like) 767 1050 IPR011009 -
Gabi2299g00019 1079 Gene3D Ribonuclease Inhibitor 442 543 IPR032675 -
Gabi2299g00019 1079 ProSitePatterns Protein kinases ATP-binding region signature. 788 810 IPR017441 GO:0005524
Gabi2299g00019 1079 Pfam Leucine rich repeat 184 225 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine rich repeat 118 176 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine rich repeat 551 609 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine rich repeat 286 345 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine Rich repeat 428 442 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine Rich repeat 379 394 IPR001611 GO:0005515
Gabi2299g00019 1079 SUPERFAMILY L domain-like 29 357 - -
Gabi2299g00019 1079 ProSiteProfiles Protein kinase domain profile. 782 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00019 1079 Gene3D Ribonuclease Inhibitor 5 160 IPR032675 -
Gabi2299g00019 1079 Gene3D Ribonuclease Inhibitor 619 704 IPR032675 -
Gabi2299g00019 1079 FunFam Leucine-rich repeat receptor protein kinase MSP1 745 860 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 92 118 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 212 238 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 475 494 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 499 525 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 140 166 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 284 310 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 379 405 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 596 626 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 451 472 - -
Gabi2299g00019 1079 SMART LRR_sd22_2 427 441 - -
Gabi2299g00019 1079 FunFam MDIS1-interacting receptor like kinase 2 861 1055 - -
Gabi2299g00019 1079 Pfam Leucine Rich Repeat 94 116 IPR001611 GO:0005515
Gabi2299g00019 1079 Pfam Leucine Rich Repeat 262 284 IPR001611 GO:0005515
Gabi2299g00019 1079 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 498 1050 - -
Gabi2299g00019 1079 ProSitePatterns Tyrosine protein kinases specific active-site signature. 906 918 IPR008266 GO:0004672|GO:0006468
Gabi2299g00019 1079 FunFam Nuclear pore complex protein NUP107 8 158 - -
Gabi2299g00019 1079 Gene3D Phosphorylase Kinase; domain 1 742 860 - -
Gabi2299g00019 1079 SUPERFAMILY L domain-like 360 614 - -
Gabi2299g00019 1079 Gene3D Ribonuclease Inhibitor 548 618 IPR032675 -
Gabi2299g00019 1079 PRINTS Leucine-rich repeat signature 596 609 - -
Gabi2299g00019 1079 PRINTS Leucine-rich repeat signature 575 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2299g00019 Gabi-Chr2299 299322 302881 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2299g00019 22 954 Receptor kinase-like Gene Family AT4G08850 36.881 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2299g00019 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2299g00019 - - gmx:102667972 912.909