Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2299g00013 | ATGGCTGTACCAAAAGTGAACAAAAAGTTGCTTGAAGACCTTGAAGAAATGGGATTTCCACTGGCACGGGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATGATTGATCATGAGAATGACGCTGATATTGATGAGATGCCATTGGTAGATATAGAGATTGATATTGAGTCCCCACAATCATTCCCTACAACAGAAGAGATGAAAATTAAAGCACAGATTTTAAGGGAACAAGAGCGTAAGAGGAAAGAGGATGAAGAAAAAATGTTTGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAAAAATTCCTCGAGGCAAAGCGAATTGCGGAAGAAAATGAAAGAAAGCGGTATTTAGCCTTGAAAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTTCTCCAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTCTAAACTTGGATTGCCTCCAGAAGGCCAAGCCATTGCGAGATCATCTGCTATTGCAGTAAAGCATGAAAAGAATTCGAAGCCTGTTTATACAAATGCAAAGGTTGAGCACTTGAGAGAATGTCTGAGGTCTCTCAAGCGTAACCACCTGGAAGACTTTGCAAAAGTCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTCACCAAGAATCCCAAGGAGGAAAAGTACAGGAAGATCCGACTGAGCAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAACTGTGTGGTTTTGAGAAAACGGGTGATTTCTTGTATCTTCCCGAAGAAAAGGTTGACACGGAACTACTAAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGACTTTTAAGTACTTAG | 921 | 0.4007 | MAVPKVNKKLLEDLEEMGFPLARATRALHYSGNTSLEDAINWMIDHENDADIDEMPLVDIEIDIESPQSFPTTEEMKIKAQILREQERKRKEDEEKMFEREREKERIQAGKKFLEAKRIAEENERKRYLALKKAEKEEEKRAREKVLQKLEQDKLNRRSKLGLPPEGQAIARSSAIAVKHEKNSKPVYTNAKVEHLRECLRSLKRNHLEDFAKVRRAFETLLVYVGNVTKNPKEEKYRKIRLSNPLFQDRVGSLNGGVEFLELCGFEKTGDFLYLPEEKVDTELLNSAGFVLNSAMTNPFFGLLST | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2299g00013 | 306 | SMART | uba_6 | 7 | 45 | IPR015940 | - | |
| Gabi2299g00013 | 306 | Gene3D | - | 8 | 53 | - | - | |
| Gabi2299g00013 | 306 | SMART | PGNneu | 216 | 277 | - | - | |
| Gabi2299g00013 | 306 | Pfam | PUB domain | 213 | 283 | IPR018997 | - | |
| Gabi2299g00013 | 306 | PANTHER | F13M7.16 PROTEIN | 1 | 304 | - | - | |
| Gabi2299g00013 | 306 | Coils | Coil | 119 | 156 | - | - | |
| Gabi2299g00013 | 306 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 5 | 46 | IPR015940 | - | |
| Gabi2299g00013 | 306 | Pfam | UBA/TS-N domain | 11 | 42 | IPR015940 | - | |
| Gabi2299g00013 | 306 | SUPERFAMILY | UBA-like | 5 | 57 | IPR009060 | GO:0005515 | |
| Gabi2299g00013 | 306 | Gene3D | - | 187 | 294 | - | - | |
| Gabi2299g00013 | 306 | Coils | Coil | 83 | 108 | - | - | |
| Gabi2299g00013 | 306 | CDD | UBA_PUB_plant | 6 | 53 | - | - | |
| Gabi2299g00013 | 306 | SUPERFAMILY | PUG domain-like | 193 | 300 | IPR036339 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2299g00013 | Gabi-Chr2299 | 216630 | 231365 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2299g00013 | 1 | 304 | C2H2 Transcription Factor Family | AT1G04850 | 62.013 | 8.08e-106 | 310 |