Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2299g00013 ATGGCTGTACCAAAAGTGAACAAAAAGTTGCTTGAAGACCTTGAAGAAATGGGATTTCCACTGGCACGGGCAACCAGAGCACTTCATTATTCTGGCAATACCAGCTTAGAGGATGCTATAAATTGGATGATTGATCATGAGAATGACGCTGATATTGATGAGATGCCATTGGTAGATATAGAGATTGATATTGAGTCCCCACAATCATTCCCTACAACAGAAGAGATGAAAATTAAAGCACAGATTTTAAGGGAACAAGAGCGTAAGAGGAAAGAGGATGAAGAAAAAATGTTTGAGAGAGAAAGGGAGAAGGAGAGGATTCAAGCAGGTAAAAAATTCCTCGAGGCAAAGCGAATTGCGGAAGAAAATGAAAGAAAGCGGTATTTAGCCTTGAAAAAAGCGGAAAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTTCTCCAGAAACTAGAGCAGGATAAGTTAAATAGAAGGTCTAAACTTGGATTGCCTCCAGAAGGCCAAGCCATTGCGAGATCATCTGCTATTGCAGTAAAGCATGAAAAGAATTCGAAGCCTGTTTATACAAATGCAAAGGTTGAGCACTTGAGAGAATGTCTGAGGTCTCTCAAGCGTAACCACCTGGAAGACTTTGCAAAAGTCAGAAGGGCCTTTGAAACACTTCTAGTGTATGTTGGAAATGTCACCAAGAATCCCAAGGAGGAAAAGTACAGGAAGATCCGACTGAGCAACCCATTATTCCAGGATAGAGTTGGAAGTTTAAATGGAGGTGTAGAGTTTCTTGAACTGTGTGGTTTTGAGAAAACGGGTGATTTCTTGTATCTTCCCGAAGAAAAGGTTGACACGGAACTACTAAATTCAGCTGGTTTTGTCTTAAATTCTGCAATGACAAATCCTTTCTTTGGACTTTTAAGTACTTAG 921 0.4007 MAVPKVNKKLLEDLEEMGFPLARATRALHYSGNTSLEDAINWMIDHENDADIDEMPLVDIEIDIESPQSFPTTEEMKIKAQILREQERKRKEDEEKMFEREREKERIQAGKKFLEAKRIAEENERKRYLALKKAEKEEEKRAREKVLQKLEQDKLNRRSKLGLPPEGQAIARSSAIAVKHEKNSKPVYTNAKVEHLRECLRSLKRNHLEDFAKVRRAFETLLVYVGNVTKNPKEEKYRKIRLSNPLFQDRVGSLNGGVEFLELCGFEKTGDFLYLPEEKVDTELLNSAGFVLNSAMTNPFFGLLST 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2299g00013 306 SMART uba_6 7 45 IPR015940 -
Gabi2299g00013 306 Gene3D - 8 53 - -
Gabi2299g00013 306 SMART PGNneu 216 277 - -
Gabi2299g00013 306 Pfam PUB domain 213 283 IPR018997 -
Gabi2299g00013 306 PANTHER F13M7.16 PROTEIN 1 304 - -
Gabi2299g00013 306 Coils Coil 119 156 - -
Gabi2299g00013 306 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Gabi2299g00013 306 Pfam UBA/TS-N domain 11 42 IPR015940 -
Gabi2299g00013 306 SUPERFAMILY UBA-like 5 57 IPR009060 GO:0005515
Gabi2299g00013 306 Gene3D - 187 294 - -
Gabi2299g00013 306 Coils Coil 83 108 - -
Gabi2299g00013 306 CDD UBA_PUB_plant 6 53 - -
Gabi2299g00013 306 SUPERFAMILY PUG domain-like 193 300 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2299g00013 Gabi-Chr2299 216630 231365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2299g00013 1 304 C2H2 Transcription Factor Family AT1G04850 62.013 8.08e-106 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2299g00013 - K24348 gmx:100781260 446.047