Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2299g00004 ATGGAAGGTCGCCGGAGGAAAACGCTTTACGACCAAATGACAGCTGGCAACACAAGTAGCGGAGACTCACTAGCCGATTTGTTCCTCAACGACGTCGTTTTAGCCAACCAGAAGACAGAAGCCGAAGTCGAAGCTGAAGCTGAAGTGAGCCACCATCTCAGCCAGAGCCGAACTCTCCAAGATATAATCCAAGAAGACGCCGTCGTTTTAACCAACAACGCGAAGGATCGCAAATCCTGGAAAGCCTTCAAGGACAAGCTTCGGCTCAGGCGCACTAACGGTTCGGTTTGGACTTCCACCGTTCCTATCCCTATCCCTATCCCTATCCCTATCCAGAATAATAATAATAATGATAACAGTGTCTTATCCCAATCCTCGCCACGCAACTCGGTCCAGGCCCAAACACGCCTTGACTCGGACGCGTCGACTCAGAACAACTTACCTCGCGAACAACCAAACGACGACGTTCAGGAAGACCACGACAATTCGGATCTCATCACCCCTCCCGTCAACGCCTTATTAGCTGGCGGCGAGTCTCCCGATGCGGCGGAAGCTGCGGCGGCTGGGGCGGCGAGCATGTCGCTGATGGATTTGTTAGAGGAGACGGATGGGGAATTGGGATTCGAGATGGATTTGTGTGGAATGAGCATTGATGATAATGATGACGTGGATGTTTATGAGAAAGAAGAAGAAAAAAAGAAGAGCGTAGTAGAGTATAATTGCTGCGTGTGCATGGTGAGGCATAAAGGTGCGGCGTTTATACCATGTGGCCACACGTTTTGCAGGATGTGTTCCAGGGAGATTTGGGTGAGCAGAGGGAATTGCCCACTTTGCAACAATTTGATTTCGGAAGTTCTTGATATTTTCTGA 870 0.5 MEGRRRKTLYDQMTAGNTSSGDSLADLFLNDVVLANQKTEAEVEAEAEVSHHLSQSRTLQDIIQEDAVVLTNNAKDRKSWKAFKDKLRLRRTNGSVWTSTVPIPIPIPIPIQNNNNNDNSVLSQSSPRNSVQAQTRLDSDASTQNNLPREQPNDDVQEDHDNSDLITPPVNALLAGGESPDAAEAAAAGAASMSLMDLLEETDGELGFEMDLCGMSIDDNDDVDVYEKEEEKKKSVVEYNCCVCMVRHKGAAFIPCGHTFCRMCSREIWVSRGNCPLCNNLISEVLDIF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2299g00004 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 215 289 IPR013083 -
Gabi2299g00004 289 CDD RING-HC 241 278 - -
Gabi2299g00004 289 ProSiteProfiles Zinc finger RING-type profile. 241 279 IPR001841 -
Gabi2299g00004 289 SUPERFAMILY RING/U-box 231 285 - -
Gabi2299g00004 289 SMART ring_2 241 278 IPR001841 -
Gabi2299g00004 289 MobiDBLite consensus disorder prediction 106 176 - -
Gabi2299g00004 289 Pfam Zinc finger, C3HC4 type (RING finger) 239 284 - -
Gabi2299g00004 289 MobiDBLite consensus disorder prediction 110 151 - -
Gabi2299g00004 289 PANTHER OS01G0917900 PROTEIN 4 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2299g00004 Gabi-Chr2299 95280 96495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2299g00004 4 289 C3H Transcription Factor Family AT3G25030 35.932 1.66e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2299g00004 - - gmx:100819018 227.639