Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2299g00003 ATGGGTTTTCTAATTCATACTAATTACTTACTGATTACTTTGCTCATATTTTCCAGCTTTTGTTTGGGCTTGGGCTTGAGCTTGATGAATGATACTATTACATCAACCAGATCCATCAGAGACCATGAGACAATAAGCTCAAACAACAGTGACTTCAAGCTAGGATTCTTCAGCCCTGAAAATTCAACAAATCGCTATGTAGCAATCTGGTATCTCTCTGAATCCTACATTATATGGATAGCTAATAGAGATCAACCCCTTAAAGATTCTTCTGGTGTTGTCAAAATTCTTAAGGGTGGCAATCTTGTAGTATTGAATGGGAAAAATCTTGTCATATGGTCAACAAATTTGACAAGTAATGTTACCAATTCAAGTGCTCAACTTGAAGATTCTGGAAATCTGGTCCTTCGAGATGATACAAGTGGAGTAACAATATGGGACAGTTTCACACATCCAGCAGGTGAGGCCGTGCCACAGATGAAAATTGCTACAAACAGAGTTACAGGTAAGAAAATAGAGTATATATCATGGAAAAGCAATTCTGATCCTTCTACTGGGTACTTCACTGGTAGCCTTGAACGCTTGGATGCTCCAGAAGTGTTTTTTTGGTTCAATAAAACTCGCCCATATTGGAGAACTGGTCCATGGAATGGAAGGGTCTTCATTGGGTCACCAAGGATGTTAACTGAGTATCTAAATGGGTGGCGTTTAGATCATGATGATGATGGAACTGTTTATCTAACTTACATTTATGGAGACCCTTCTACCTTTGGAATCCTTTCCTTGACTCCACATGGCACACTGAAATATGTAAGGTTTTTGAACAAGAAGGAAATTCTGACTCTTGAGGTAGATCAGAATAAGTGTGATTTTTATGGCACTTGCGGGCCATTTGGAAATTGTGATCCTTTAAACTCTCCAATTTGCAGCTGTTTTCAAGGGTTTGAGCCTCGGAATTCAGAGGAATGGAATAGGAAAAATTGGACTAGTGGATGTGAGAGAACTGCACCACTTGAGTGTTCCAAGTTGAACAATGGAAGTGCAATACAAAAAGATGGGTTTTTGGTGTTTCATAATATGAAAGTTCCTGACTTTGCAGAGAGATCAGATGGTAACCAAGAAAAATGTGGAACAGATTGCTTAGCAAATTGCTCTTGCTTGGCTTATGCATATGATTCTTATATAGGCTGCATGTATTGGAGTAGAGACTTAATTGACTTGCAGAAATTTCCATATGGAGGAGTTGATCTCTTCATTCGTGTGCCCCAATCTGAACTTGTTACAGGAGGGAAAAAGGGAAGAGGACACAAGACACTAATCATGGCCATTACAGGGTCAGTTGGAACTTTTGCTTTAGCAGTGTGTGCATATCTTTTGTGGCGGAAATGGACTCCTAAGCATACAGGAAGTCAGCCTCAAAACTTGAATATCGGTGATAAAAAACAAATGAAACTGGAAGAGCTGCCACTATTTGATTTTGAAAAGCTTGCAACTGCTACAAACAATTTTCACTTAGCTAATATGCTTGGAAAGGGAGGTTTTGGACCAGTATACAAGGGACAATTGGAAGATGGCCAAGAAATTGCAGTGAAAAGACTCTCGAAAGCTTCTGGACAAGGATTAGAAGAATTCATGAATGAAGTTTTGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAGAATTCTTGGTTGTTGTGTTGAACGAGACGAACAAATGCTGGTTTATGAGTTCATGCCAAATAAAAGTTTGGATGCATTTATCTTTGATCCACTCCAAAGGAAAGTTCTAAATTGGAGAAAGCGCTTCAATATAATTGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGAATTATTCATAGAGATCTTAAGGCAAGCAACATCTTATTAGATGCTGAGATGAATCCAAAGATATCAGATTTTGGTTTAGCAAGAATTTTTAAGGGTGGTGAAGATGATGCAGAAAACACAAAAAGAGTTGTTGGAACTTATGGTTATATGCCCCCTGAATATGCAATGGAGGGTCTCTTCTCAGAGAAATCAGATGTCTATAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGTGGACGAAGAAACACTAGCTTCTATAACAATGAGCAATCGCTTAGCCTTGTAGGATTTGCATGGAAACTATGGAACGAAGACAATACAGTATCTTTAATAGATACAGAGATATGGGATCCATTACTCGAAAGTAGTATGTTGAGGTGCATACACATAGGACTTCTTTGTGTGCAAGAACTTACAAGAGAAAGACCAACTATATCCACTGTAGTTTTGATGCTCATTAGCGAGATTACACATCTTCCTCCACCAGGGTTAGTTGCATTTGTCCAAAAGCAAAATTTTCCAAGTATAAATTCCAATCAAAAAAGTCAATGTAACTCGAACAACAATGTAACTCTTAGTGAAATCCAAGGTAGGTAA 2466 0.3816 MGFLIHTNYLLITLLIFSSFCLGLGLSLMNDTITSTRSIRDHETISSNNSDFKLGFFSPENSTNRYVAIWYLSESYIIWIANRDQPLKDSSGVVKILKGGNLVVLNGKNLVIWSTNLTSNVTNSSAQLEDSGNLVLRDDTSGVTIWDSFTHPAGEAVPQMKIATNRVTGKKIEYISWKSNSDPSTGYFTGSLERLDAPEVFFWFNKTRPYWRTGPWNGRVFIGSPRMLTEYLNGWRLDHDDDGTVYLTYIYGDPSTFGILSLTPHGTLKYVRFLNKKEILTLEVDQNKCDFYGTCGPFGNCDPLNSPICSCFQGFEPRNSEEWNRKNWTSGCERTAPLECSKLNNGSAIQKDGFLVFHNMKVPDFAERSDGNQEKCGTDCLANCSCLAYAYDSYIGCMYWSRDLIDLQKFPYGGVDLFIRVPQSELVTGGKKGRGHKTLIMAITGSVGTFALAVCAYLLWRKWTPKHTGSQPQNLNIGDKKQMKLEELPLFDFEKLATATNNFHLANMLGKGGFGPVYKGQLEDGQEIAVKRLSKASGQGLEEFMNEVLVISKLQHRNLVRILGCCVERDEQMLVYEFMPNKSLDAFIFDPLQRKVLNWRKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDAEMNPKISDFGLARIFKGGEDDAENTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFYNNEQSLSLVGFAWKLWNEDNTVSLIDTEIWDPLLESSMLRCIHIGLLCVQELTRERPTISTVVLMLISEITHLPPPGLVAFVQKQNFPSINSNQKSQCNSNNNVTLSEIQGR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2299g00003 821 CDD B_lectin 36 152 IPR001480 -
Gabi2299g00003 821 PIRSF SRK 3 821 IPR024171 GO:0004674
Gabi2299g00003 821 ProSiteProfiles Protein kinase domain profile. 503 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00003 821 MobiDBLite consensus disorder prediction 801 821 - -
Gabi2299g00003 821 Gene3D - 26 151 IPR036426 -
Gabi2299g00003 821 Pfam S-locus glycoprotein domain 211 318 IPR000858 GO:0048544
Gabi2299g00003 821 Pfam Protein tyrosine and serine/threonine kinase 504 717 IPR001245 GO:0004672|GO:0006468
Gabi2299g00003 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 17 766 - -
Gabi2299g00003 821 SMART blect_4 36 152 IPR001480 -
Gabi2299g00003 821 Pfam D-mannose binding lectin 77 178 IPR001480 -
Gabi2299g00003 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Gabi2299g00003 821 ProSiteProfiles PAN/Apple domain profile. 340 422 IPR003609 -
Gabi2299g00003 821 SMART serkin_6 503 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00003 821 Gene3D Phosphorylase Kinase; domain 1 477 578 - -
Gabi2299g00003 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Gabi2299g00003 821 FunFam receptor-like serine/threonine-protein kinase SD1-8 476 578 - -
Gabi2299g00003 821 Gene3D Transferase(Phosphotransferase) domain 1 579 781 - -
Gabi2299g00003 821 SUPERFAMILY Protein kinase-like (PK-like) 488 796 IPR011009 -
Gabi2299g00003 821 CDD PAN_AP_plant 337 422 - -
Gabi2299g00003 821 SMART ntp_6 349 421 IPR003609 -
Gabi2299g00003 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 183 IPR036426 -
Gabi2299g00003 821 ProSiteProfiles Bulb-type lectin domain profile. 30 149 IPR001480 -
Gabi2299g00003 821 CDD STKc_IRAK 509 775 - -
Gabi2299g00003 821 Pfam PAN-like domain 350 407 IPR003609 -
Gabi2299g00003 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 149 - -
Gabi2299g00003 821 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2299g00003 Gabi-Chr2299 41712 47307 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2299g00003 454 816 Receptor kinase-like Gene Family AT4G23150 52.342 3.82e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2299g00003 PK_Tyr_Ser-Thr 6.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2299g00003 - - ccaj:109790907 1327