Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2299g00001 ATGAATGATACTATTACATCAACCAGATCCATCAGAGACCATGAGACAATAAGCTCAAACAACAGTGACTTCAAGCTAGGATTCTTCAGCCCTGAAAATTCAACAAATCGCTATGTAGCAATCTGGTATCTCTCTGAATCCTACATTATATGGATAGCTAATAGAGATCAACCCCTTAAAGATTCTTCTGGTGTTGTCAAAATTCTTAAGGGTGGCAATCTTGTAGTATTGAATGGGAAAAATCTTGTCATATGGTCAACAAATTTGACAAGTAATGTTACCAATTCAAGTGCTCAACTTGAAGATTCTGGAAATCTGGTCCTTCGAGATGATACAAGTGGAGTAACAATATGGGACAGTTTCACACATCCAGCAGGTGAGGCCGTGCCACAGATGAAAATTGCTACAAACAGAGTTACAGGTAAGAAAATAGAGTATATATCATGGAAAAGCAATTCTGATCCTTCTACTGGGTACTTCACTGGTAGCCTTGAACGCTTGGATGCTCCAGAAGTGTTTTTTTGGTTCAATAAAACTCGCCCATATTGGAGAACTGGTCCATGGAATGGAAGGGTCTTCATTGGGTCACCAAGGATGTTAACTGAGTATCTAAATGGGTGGCGTTTAGATCATGATGATGATGGAACTGTTTATCTAACTTACATTTATGGAGACCCTTCTACCTTTGGAATCCTTTCCTTGACTCCACATGGCACACTGAAATATGTAAGGTTTTTGAACAAGAAGGAAATTCTGACTCTTGAGGTAGATCAGAATAAGTGTGATTTTTATGGCACTTGCGGGCCATTTGGAAATTGTGATCCTTTAAACTCTCCAATTTGCAGCTGTTTTCAAGGGTTTGAGCCTCGGAATTCAGAGGAATGGAATAGGAAAAATTGGACTAGTGGATGTGAGAGAACTGCACCACTTGAGTGTTCCAAGTTGAACAATGGAAGTGCAATACAAAAAGATGGGTTTTTGGTGTTTCATAATATGAAAGTTCCTGACTTTGCAGAGAGATCAGATGGTAACCAAGAAAAATGTGGAACAGATTGCTTAGCAAATTGCTCTTGCTTGGCTTATGCATATGATTCTTATATAGGCTGCATGTATTGGAGTAGAGACTTAATTGACTTGCAGAAATTTCCATATGGAGGAGTTGATCTCTTCATTCGTGTGCCCCAATCTGAACTTGTTACAGGAGGGAAAAAGGGAAGAGGACACAAGACACTAATCATGGCCATTACAGGGTCAGTTGGAACTTTTGCTTTAGCAGTGTGTGCATATCTTTTGTGGCGGAAATGGACTCCTAAGCATACAGGAAGTCAGCCTCAAAACTTGAATATCGGTGATAAAAAACAAATGAAACTGGAAGAGCTGCCACTATTTGATTTTGAAAAGCTTGCAACTGCTACAAACAATTTTCACTTAGCTAATATGCTTGGAAAGGGAGGTTTTGGACCAGTATACAAGGGACAATTGGAAGATGGCCAAGAAATTGCAGTGAAAAGACTCTCGAAAGCTTCTGGACAAGGATTAGAAGAATTCATGAATGAAGTTTTGGTGATTTCTAAACTTCAACATCGCAATCTTGTAAGAATTCTTGGTTGTTGTGTTGAACGAGACGAACAAATGCTGGTTTATGAGTTCATGCCAAATAAAAGTTTGGATGCATTTATCTTTGATCCACTCCAAAGGAAAGTTCTAAATTGGAGAAAGCGCTTCAATATAATTGAAGGAATAGCTCGAGGTATACTTTATCTTCATAGAGACTCAAGACTAAGAATTATTCATAGAGATCTTAAGGCAAGCAACATCTTATTAGATGCTGAGATGAATCCAAAGATATCAGATTTTGGTTTAGCAAGAATTTTTAAGGGTGGTGAAGATGATGCAGAAAACACAAAAAGAGTTGTTGGAACTTATGGTTATATGCCCCCTGAATATGCAATGGAGGGTCTCTTCTCAGAGAAATCAGATGTCTATAGCTTTGGGGTTTTATTGCTAGAGATTGTTAGTGGACGAAGAAACACTAGCTTCTATAACAATGAGCAATCGCTTAGCCTTGTAGGATTTGCATGGAAACTATGGAACGAAGACAATACAGTATCTTTAATAGATACAGAGATATGGGATCCATTACTCGAAAGTAGTATGTTGAGGTGCATACACATAGGACTTCTTTGTGTGCAAGAACTTACAAGAGAAAGACCAACTATATCCACTGTAGTTTTGATGCTCATTAGCGAGATTACACATCTTCCTCCACCAGGGTTAGTTGCATTTGTCCAAAAGCAAAATTTTCCAAGTATAAATTCCAATCAAAAAAGTCAATGTAACTCGAACAACAATGTAACTCTTAGTGAAATCCAAGGTAGGTAA 2382 0.3825 MNDTITSTRSIRDHETISSNNSDFKLGFFSPENSTNRYVAIWYLSESYIIWIANRDQPLKDSSGVVKILKGGNLVVLNGKNLVIWSTNLTSNVTNSSAQLEDSGNLVLRDDTSGVTIWDSFTHPAGEAVPQMKIATNRVTGKKIEYISWKSNSDPSTGYFTGSLERLDAPEVFFWFNKTRPYWRTGPWNGRVFIGSPRMLTEYLNGWRLDHDDDGTVYLTYIYGDPSTFGILSLTPHGTLKYVRFLNKKEILTLEVDQNKCDFYGTCGPFGNCDPLNSPICSCFQGFEPRNSEEWNRKNWTSGCERTAPLECSKLNNGSAIQKDGFLVFHNMKVPDFAERSDGNQEKCGTDCLANCSCLAYAYDSYIGCMYWSRDLIDLQKFPYGGVDLFIRVPQSELVTGGKKGRGHKTLIMAITGSVGTFALAVCAYLLWRKWTPKHTGSQPQNLNIGDKKQMKLEELPLFDFEKLATATNNFHLANMLGKGGFGPVYKGQLEDGQEIAVKRLSKASGQGLEEFMNEVLVISKLQHRNLVRILGCCVERDEQMLVYEFMPNKSLDAFIFDPLQRKVLNWRKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDAEMNPKISDFGLARIFKGGEDDAENTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFYNNEQSLSLVGFAWKLWNEDNTVSLIDTEIWDPLLESSMLRCIHIGLLCVQELTRERPTISTVVLMLISEITHLPPPGLVAFVQKQNFPSINSNQKSQCNSNNNVTLSEIQGR 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2299g00001 793 Pfam D-mannose binding lectin 49 150 IPR001480 -
Gabi2299g00001 793 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 3 738 - -
Gabi2299g00001 793 Gene3D Transferase(Phosphotransferase) domain 1 551 753 - -
Gabi2299g00001 793 CDD PAN_AP_plant 309 394 - -
Gabi2299g00001 793 SMART blect_4 8 124 IPR001480 -
Gabi2299g00001 793 Pfam S-locus glycoprotein domain 183 290 IPR000858 GO:0048544
Gabi2299g00001 793 Gene3D Phosphorylase Kinase; domain 1 449 550 - -
Gabi2299g00001 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 551 755 - -
Gabi2299g00001 793 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1 121 - -
Gabi2299g00001 793 ProSiteProfiles EGF-like domain profile. 257 293 IPR000742 -
Gabi2299g00001 793 PIRSF SRK 1 793 IPR024171 GO:0004674
Gabi2299g00001 793 ProSiteProfiles Bulb-type lectin domain profile. 2 121 IPR001480 -
Gabi2299g00001 793 SMART serkin_6 475 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00001 793 FunFam receptor-like serine/threonine-protein kinase SD1-8 448 550 - -
Gabi2299g00001 793 SMART ntp_6 321 393 IPR003609 -
Gabi2299g00001 793 CDD B_lectin 8 124 IPR001480 -
Gabi2299g00001 793 SUPERFAMILY alpha-D-mannose-specific plant lectins 41 155 IPR036426 -
Gabi2299g00001 793 SUPERFAMILY Protein kinase-like (PK-like) 460 769 IPR011009 -
Gabi2299g00001 793 ProSitePatterns Serine/Threonine protein kinases active-site signature. 596 608 IPR008271 GO:0004672|GO:0006468
Gabi2299g00001 793 ProSiteProfiles PAN/Apple domain profile. 312 394 IPR003609 -
Gabi2299g00001 793 CDD STKc_IRAK 481 747 - -
Gabi2299g00001 793 Pfam PAN-like domain 322 379 IPR003609 -
Gabi2299g00001 793 Pfam Protein tyrosine and serine/threonine kinase 476 689 IPR001245 GO:0004672|GO:0006468
Gabi2299g00001 793 Gene3D - 1 123 IPR036426 -
Gabi2299g00001 793 ProSiteProfiles Protein kinase domain profile. 475 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2299g00001 793 MobiDBLite consensus disorder prediction 773 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2299g00001 Gabi-Chr2299 41712 47537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2299g00001 426 788 Receptor kinase-like Gene Family AT4G23150 52.342 2.17e-121 378
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2299g00001 PK_Tyr_Ser-Thr 6.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2299g00001 - - gmx:100786846 1306.2