Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2296g00039 ATGGCAAACCCTAAGGTCTTCTTTGACATGACCATCGGCGGCCAACCTGCCGGCCGTATCGTCATGGAACTCTTCGCCGATACCACCCCGAGAACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAGGGAGTTGGCCGCAGCGGTGACTTCACCGCCGGAAACGGCACCGGCGGAGAGTCGATCTACGGCGCAAAGTTCGCCGACGAGAACTTCATCAAGAAGCACACCGGTCCCGGCGTGCTGTCGATGGCGAATGCTGGCCCCGGAACCAACGGATCTCAGTTCTTCGTCTGCACAGCCAAGACGGAGTGGCTGGACGGGAAGCACGTGGTGTTCGGCCAGGTGGTTGAGGGACTTAACGTTGTGAAGGAGATCGAGAAGGTTGGATCCAGTTCCGGCAAGACCTCAAGGCCGGTGGTGGTTGCTGATTGCGGTCAACTCTCTTAG 453 0.6004 MANPKVFFDMTIGGQPAGRIVMELFADTTPRTAENFRALCTGEKGVGRSGDFTAGNGTGGESIYGAKFADENFIKKHTGPGVLSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGLNVVKEIEKVGSSSGKTSRPVVVADCGQLS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2296g00039 150 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 47 - -
Gabi2296g00039 150 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 148 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 PIRSF Peptidylpro_ismrse 1 150 IPR024936 GO:0003755
Gabi2296g00039 150 FunFam Peptidyl-prolyl cis-trans isomerase 1 149 - -
Gabi2296g00039 150 SUPERFAMILY Cyclophilin-like 2 149 IPR029000 -
Gabi2296g00039 150 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 147 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 96 108 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 81 96 IPR002130 GO:0000413|GO:0003755
Gabi2296g00039 150 Gene3D - 1 150 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2296g00039 Gabi-Chr2296 282803 283755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2296g00039 18 130 U-box Gene Family AT5G67530 46.875 3.20e-21 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2296g00039 K01802 - pvy:116118183 285.804