Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2296g00030 ATGGCTTTGTTTTCAGTTATTTTCATTCTTCTTCTACATGTTGTGCTTCTTATCTCTTTGACCAATGAAGCTTTAGGTGTGTCACATAGTTACCACCTTAGCCAGGAGGTGCTAGCACAACAAGAAGCCGACAGAGTGCATGGACTCCCCGGCCAGCCTCCGGTGAAGTTCAATCAATATGCAGGTTATATCACTGTCAATGAAACTCATGGAAGAGCACTGTTCTATTGGTTCTTCGAGTCCACTGATAAACCAAAAGAAAAACCTCTTCTCCTATGGCTCAATGGAGGCCCTGGTTGTTCCTCAATTGGATATGGAGAAGCAGAGGAGTTAGGACCCTTCTTTCCACAGAACAGCAGCCAACCAAAGCTAAAGTTGAACCCTTATTCTTGGAATAAAGCTGTAAATCTTTTGTTTCTGGAATCCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAATGATATTAGTGAGCTTGGTGACACTGTTACTGCTAGGGATTCATACACCTTTATCATCAAGTGGCTTAGTAGATTTCCACAATTCAGATCACAAGAGTTCTACATTGCTGGCGAAAGTTATGCAGGACACTATGTTCCCCAGCTTTCTGAGCTCATTTTCGATAATAATCATAATCCTGCCAAAGAAGACTACATTAACTTCAAAGGGTTCATGATTGGAAATGCACAAATGGATGATGAAACAGACCAAAAGGGTATGATAGATTATGCGTGGGATCATGGTGTGATATCTGATGGTTTATACCATGACATCAAAACCAAATGCAACTTCAGCCTTGCCAATCAAACAAAAGACTGCAGTAATGAACTCAATAAGTACTTCAAAGTGTATAATGTTATTGACATGTATAGCTTGTACACTCCCTTGTGTCTCAGCAACAGCAGCACCAGCAACAGAAGGGAAGCCCCTGTCATCGAAGGCGTATCCCCTCATTCTTTTTCCAAATTTGATGGGTGGCATAAAAAACCAGCTGGATATGATCCTTGTGCATCAGATTACACTTATGTGTACCTAAATATGCCAGAAGTCCAAAAGGCACTGCATGCCAATGTTACCAATATTCCCTATCCATGGACTCACTGCAGCAATAATATCTCATTTTGGAGTGATGCACCACAGTCCATGCTTCCTGTCATCAGAAAGCTTATTGCTGGTGGTATTCGCATATGGATTTACAGTGGGGATACCGATGGAAGAATTCCAGTGACTGCAACAAGATACACACTGAGAAAACTGGGGCTCAGCATTGTTCAAGATTGGACTACCTGGTATACCAGCCAGCAGGTGGGAGGATGGACCGTTGTATACGATGGGCTAACTTATGTGACCATAAGAGGTGCTGGTCATCAGGTTCCTACTTTCGCTCCCAAGCAAGCTCTTCAGCTACTTCAACACTTTTTAGCCAATAAGACATTACCACCTCAGCCAATTCAATGA 1461 0.4271 MALFSVIFILLLHVVLLISLTNEALGVSHSYHLSQEVLAQQEADRVHGLPGQPPVKFNQYAGYITVNETHGRALFYWFFESTDKPKEKPLLLWLNGGPGCSSIGYGEAEELGPFFPQNSSQPKLKLNPYSWNKAVNLLFLESPVGVGFSYTNTSNDISELGDTVTARDSYTFIIKWLSRFPQFRSQEFYIAGESYAGHYVPQLSELIFDNNHNPAKEDYINFKGFMIGNAQMDDETDQKGMIDYAWDHGVISDGLYHDIKTKCNFSLANQTKDCSNELNKYFKVYNVIDMYSLYTPLCLSNSSTSNRREAPVIEGVSPHSFSKFDGWHKKPAGYDPCASDYTYVYLNMPEVQKALHANVTNIPYPWTHCSNNISFWSDAPQSMLPVIRKLIAGGIRIWIYSGDTDGRIPVTATRYTLRKLGLSIVQDWTTWYTSQQVGGWTVVYDGLTYVTIRGAGHQVPTFAPKQALQLLQHFLANKTLPPQPIQ 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2296g00030 486 Gene3D alpha/beta hydrolase 40 300 IPR029058 -
Gabi2296g00030 486 Gene3D - 383 476 - -
Gabi2296g00030 486 SUPERFAMILY alpha/beta-Hydrolases 40 481 IPR029058 -
Gabi2296g00030 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 140 150 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 139 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 176 201 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 PRINTS Carboxypeptidase C serine protease (S10) family signature 447 460 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 ProSitePatterns Serine carboxypeptidases, histidine active site. 447 464 IPR033124 GO:0004185
Gabi2296g00030 486 FunFam Carboxypeptidase 383 477 - -
Gabi2296g00030 486 ProSitePatterns Serine carboxypeptidases, serine active site. 190 197 IPR018202 GO:0004185
Gabi2296g00030 486 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 46 464 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 FunFam Carboxypeptidase 333 480 - -
Gabi2296g00030 486 Pfam Serine carboxypeptidase 50 477 IPR001563 GO:0004185|GO:0006508
Gabi2296g00030 486 FunFam Carboxypeptidase 40 300 - -
Gabi2296g00030 486 Gene3D - 337 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2296g00030 Gabi-Chr2296 221701 231332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2296g00030 345 480 Calmodulin-binding Proteins AT2G22960 31.387 3.13e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2296g00030 K16297 - gmx:100797264 809.675