Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2296g00019 ATGTCCATTTTCTGGAACTTACTCTTTTACTGCCTCCTCACCACAGTTTCCACGGGAAGAGAATATTCCGGCAAAGAGACACCGCAGCAGGAGGCTGATAGAGTGAAGAACTTGCCCGGACAACCACCTGTGAAATTCAGACACTACGCTGGTTATGTGAAGCTAAGACCGCATGAAGAGAAGGCACTGTTCTACTGGTTCTTTGAAGCTCAAGAAGCACCCTCTCAAAAGCCTCTTTTGCTTTGGCTTAACGGAGGACCTGGTTGCTCCTCCATTGGCTATGGAGCTGCACGAGAGCTGGGTCCATTTCTTGTTAAAGACAAAGAACGCCTCAAACTTAACAAATTCTCTTGGAACAGAGCTGCAAATATCATATTCTTGGAGTCCCCAGTTGGTGTGGGATTTTCTTACACTAACAACTCCAAAGATTTACAAGAGCTCGGGGATCGAGTGACTGCAATTGATAACTATGCCTTCTTGATTGGTTGGTTCAAAAGGTTCCCAAGCTTCAGATCCCATGACTTTTATATTGCAGGAGAGAGCTATGCAGGTCATTATGTTCCACAGCTTGCTGAGGTCATCTATGAAGGAAACAAAGATACCAAAAAGGGTTCTTACATAAATCTCAAGGGATTCATGGTGGGAAATGCTGTAATGAATGATGTTACAGATGTAAAAGGAATAATTGATTATGCTTGGAGCCATGCCATCATATCAGACCAAGAATACTATGGGATAGTAAAAGATTGTGACTTCAGCAAAGAAAACAAATCAAAGGCTTGCGAAATGCGAGTAGGAGGGTTATTAGAAGCTTACTCGGAGATTGACATATATAGCATTTATTCACCAATTTGCATCAGTGACTATCAAAGAGCAGTTTCAGCCAAACTTCTTGTTGCTCCTCACCTTCTCACATCACATGACCTATGGCATACGCTACCGGCAGGATACGATCCTTGTACAGAGGATTATATAGACAAATATTTCAATAATGAGGATGTTCAGAAGGCTCTACATGCCAATATCACCAACTTGTCATATCCCTATACCCTTTGCAGCGCTGTAATTAGGAAATGGAATGATTCACCAAACACAGTTCTGCCAGTTATTAAGAAGCTCTTACATGCCGGTTTACGCATTTGGATCTATAGTGGGGACACGGATGGTAGAGTTCCAGTGACATCAACAAGATACAGCATAAACAAGATGGATTTGAAAATAAGGAAAGAATGGAGAGCTTGGTTTCACAAGAAACAAGTGGCAGGGTGGATGGAAGTGTATGAGGGTGGCCTCACATTTGCCACCATTAGAGGTGCTGGCCACCAAGTTCCTGTCCTTGCACCAGAACAATCCCTTTCTCTGTTCACCCATTTTCTCTCTTCTCACACTCTGCCATCTTCTCGCTTCTAA 1410 0.4298 MSIFWNLLFYCLLTTVSTGREYSGKETPQQEADRVKNLPGQPPVKFRHYAGYVKLRPHEEKALFYWFFEAQEAPSQKPLLLWLNGGPGCSSIGYGAARELGPFLVKDKERLKLNKFSWNRAANIIFLESPVGVGFSYTNNSKDLQELGDRVTAIDNYAFLIGWFKRFPSFRSHDFYIAGESYAGHYVPQLAEVIYEGNKDTKKGSYINLKGFMVGNAVMNDVTDVKGIIDYAWSHAIISDQEYYGIVKDCDFSKENKSKACEMRVGGLLEAYSEIDIYSIYSPICISDYQRAVSAKLLVAPHLLTSHDLWHTLPAGYDPCTEDYIDKYFNNEDVQKALHANITNLSYPYTLCSAVIRKWNDSPNTVLPVIKKLLHAGLRIWIYSGDTDGRVPVTSTRYSINKMDLKIRKEWRAWFHKKQVAGWMEVYEGGLTFATIRGAGHQVPVLAPEQSLSLFTHFLSSHTLPSSRF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2296g00019 469 Gene3D alpha/beta hydrolase 29 287 IPR029058 -
Gabi2296g00019 469 FunFam Carboxypeptidase 29 287 - -
Gabi2296g00019 469 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Gabi2296g00019 469 ProSitePatterns Serine carboxypeptidases, histidine active site. 431 448 IPR033124 GO:0004185
Gabi2296g00019 469 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 446 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 FunFam Carboxypeptidase 366 461 - -
Gabi2296g00019 469 Pfam Serine carboxypeptidase 39 460 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 Gene3D - 320 357 - -
Gabi2296g00019 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 114 126 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 127 137 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 431 444 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Gabi2296g00019 469 FunFam Carboxypeptidase 316 464 - -
Gabi2296g00019 469 SUPERFAMILY alpha/beta-Hydrolases 30 465 IPR029058 -
Gabi2296g00019 469 Gene3D - 366 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2296g00019 Gabi-Chr2296 151394 157547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2296g00019 325 464 Calmodulin-binding Proteins AT2G22960 31.206 6.04e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2296g00019 K16297 - gmx:100799746 816.994