Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2296g00002 ATGGGCAAGTCAAGCAAGAAATCTGCTCCCAAAGTTGACGCTGCTCCAGCTGTTGTTCCGCTATCAAAGCCTGGGAAAAAAGGCAAGAGGCAGGCTGATGATGAACTCGAGAAGAAAGTGAGTGCAAAGAAGCAGAAGATGGAAGAGGTTGCTGAGAAGCAAAAGAAAGAAGTGAAGGTGCAAAAGAACAAGAAGGAAAGCAGTTCAGATGATTCCTCTTCAGAATCTGAAGACGAGAAACCTGCAGCAAAAGTTGCTGTTCCATCAAAAAAGCAACCTGCCAAAAACGGCACTCTGAGTACCCCAGCAAAGAAAGGCAAACCAGTTCCCAGTTCCAGTTCTGATTCCTCGGATGATGACTCTGATGAGGATGAAGTGAGTGCAAAAGTTACTGAGAACCAAAAGAAGGAAGCGAAGGTGCAAACGAATAAGAAGGAAAGCAGTTCAGATGATTCTTCAGAATCTGAAGATGAGAAACCTGTGGCCAAAGTTGCTGCTCCTTCAAAAAGTCAGCCTGCTAAAAATGGCACTCTAAGTACCCAAGCAAAGGGAGGCAAGCCAGCCCCCAGTTCCAGCTCTCCTGAATCTTCGGATGAGGATGATGATGACTCCGATGAGGATGAAGCTCCAAAATCCAAGGTGGCCCCTGCTGCAATTAAGAATGGATCTGCTTCTACAAATAAGAAAATCCAGCCAAGTGAAAGCTCTGAGACTGATTCTGATGACAGCTCTGATGAGGACAAAGTTTTGGCTGCTGCTGCTGCTCTTGCTGCTGCTGCTGGTGGTAAGAACGTGTCTGCCAAGAAGGTCGATTCTGACTCAACCTCAGATGAAGACTCAGATGAAGACTCAGATGAAGACGATGATAAGAAAAAACCTGCAACAACATTGTCCAAAAAGATGCCTGCCTCTGCAGTTGCTCCAAATAAGAAAGTTGAGACAAGTGAAGGCTCAGATGATGAATCAAGTGACAGCTCTGATGAAGATAATGATACAAAGCCTCCTGTAACTGCTGTGTCCAAAGCTTCTGTTGCAACAAAGAATGTTGACAACTCAGATTCCGAAGATAGCAGCTCCGATGAAGACAATGGAAAAATGGATGTTGATAAGGATGATAGCTCTGATGAAAGTGAGGAAAAACCACAAAAGAAAAAGCCTGTGAAAGATTCAAAAGAAAGCTCTGATAGTTCAGAGGACAGTGAGGAGGAAAATGAGAAACCTTCCAAAACTCCCCAGAAGAGAGTTAATGATGTGGAGATGGTTGATGCTGCCTCGACTGGAAAGAGAGCTCCTAAAACCCCAGCAACACCAAATGACCAAAGTGGCACTTCAAAGACACTATTTGTTGGAAACTTGTCATATAGTGTGCAGCGAGCTGATGTGGAAAATTTCTTCCAAGACTGTGGTGAAGTTGTTGATGTCCGTCTTGCTACTGATGATGAAGGGAATTTTAAAGGCTTTGGACATGTTGAATTTGCAACAGCGGAGGCAGCCCAAAATGCCCTTGAGTTGAATGGGCAAGAATTGTTGCAACGTGCTGTCCGGCTTGATTTAGCTCGGGAAAGGGGTGCATATACTCCAAATAGCGGCGGCAACTGGGATAACTCATCCCAGAAGAGTGGACGAGGCCAGTCTCAAACTGTATTTGTAAAGGGTTTTGATAAGGATGCTGAGGAGGAGGAGATAAAAGCTAGCCTGGGGGAGCATTTCGGATCTTGTGGAGAAATTACAAGGATATCAGTTCCGAAAGATTATGATTCTGGTTCTGTTAAGGGGTTTGCGTACTTGGACTTCAGTGATGTTGATAGCATGAATAAAGCTCTGGAACTCCATGAAACTGAACTTGGTGGTTATACCTTGTCAGTGGATGAAGCCAAACCCAGAGATAATCAAGGTTCGGGTGGAAGGAGTGGTGGTGGTCGATTTGGTGGAAGGGGTGGCAGAGGTCAATCTGGCGGAAGGGGTGGCAGAGGTCAATTTGGTGGCCGGGGTGGCAGAGATTTTGGTGGAAGGGGGGGAAGTGGGGGCAGAGGTGGTCGAGGAAGAGGAGGCGGTGGTAGGGGTCGTGGAGCACCTAATAGACCTAGCTTTTCTGCACAAGGGAAGAAGACCACTTTCGCTGATGAGGACTAA 2133 0.4613 MGKSSKKSAPKVDAAPAVVPLSKPGKKGKRQADDELEKKVSAKKQKMEEVAEKQKKEVKVQKNKKESSSDDSSSESEDEKPAAKVAVPSKKQPAKNGTLSTPAKKGKPVPSSSSDSSDDDSDEDEVSAKVTENQKKEAKVQTNKKESSSDDSSESEDEKPVAKVAAPSKSQPAKNGTLSTQAKGGKPAPSSSSPESSDEDDDDSDEDEAPKSKVAPAAIKNGSASTNKKIQPSESSETDSDDSSDEDKVLAAAAALAAAAGGKNVSAKKVDSDSTSDEDSDEDSDEDDDKKKPATTLSKKMPASAVAPNKKVETSEGSDDESSDSSDEDNDTKPPVTAVSKASVATKNVDNSDSEDSSSDEDNGKMDVDKDDSSDESEEKPQKKKPVKDSKESSDSSEDSEEENEKPSKTPQKRVNDVEMVDAASTGKRAPKTPATPNDQSGTSKTLFVGNLSYSVQRADVENFFQDCGEVVDVRLATDDEGNFKGFGHVEFATAEAAQNALELNGQELLQRAVRLDLARERGAYTPNSGGNWDNSSQKSGRGQSQTVFVKGFDKDAEEEEIKASLGEHFGSCGEITRISVPKDYDSGSVKGFAYLDFSDVDSMNKALELHETELGGYTLSVDEAKPRDNQGSGGRSGGGRFGGRGGRGQSGGRGGRGQFGGRGGRDFGGRGGSGGRGGRGRGGGGRGRGAPNRPSFSAQGKKTTFADED 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2296g00002 710 CDD RRM1_NUCLs 446 522 IPR034349 -
Gabi2296g00002 710 SUPERFAMILY RNA-binding domain, RBD 434 543 IPR035979 GO:0003676
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 523 546 - -
Gabi2296g00002 710 SMART rrm1_1 547 623 IPR000504 GO:0003723
Gabi2296g00002 710 SMART rrm1_1 446 517 IPR000504 GO:0003723
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 358 395 - -
Gabi2296g00002 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 546 627 IPR000504 GO:0003723
Gabi2296g00002 710 Coils Coil 33 64 - -
Gabi2296g00002 710 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 445 521 IPR000504 GO:0003723
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 127 163 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 219 233 - -
Gabi2296g00002 710 SUPERFAMILY RNA-binding domain, RBD 538 657 IPR035979 GO:0003676
Gabi2296g00002 710 Gene3D - 349 530 IPR012677 -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 26 85 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 431 445 - -
Gabi2296g00002 710 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 50 589 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 1 445 - -
Gabi2296g00002 710 FunFam Nucleolin 2 419 529 - -
Gabi2296g00002 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 447 514 IPR000504 GO:0003723
Gabi2296g00002 710 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 548 620 IPR000504 GO:0003723
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 170 194 - -
Gabi2296g00002 710 Gene3D - 532 662 IPR012677 -
Gabi2296g00002 710 CDD RRM2_NUCLs 547 625 IPR034350 -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 619 710 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 332 352 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 402 416 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 93 115 - -
Gabi2296g00002 710 MobiDBLite consensus disorder prediction 528 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2296g00002 Gabi-Chr2296 25368 31391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2296g00002 447 626 Eukaryotic Initiation Factors Gene Family AT1G22760 26.455 9.58e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2296g00002 K11294 - gmx:100786132 579.711