Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2296g00001 ATGTACTTGAGGAGAATACAGTGCAGAGATCGGAGATGGGCTTTAGTGTTGCAGCCATCGAAATACTTTTTTAGGCCAAGATTCTCAGATCATCCATGCTTTCAATCCTTGCCCCCTAAGACCAGTGTGAAAGAATATGCTTCACATTGCAGTATCATCAGAAGACATATTTTAGCTTCAGATTCATCTAGGCATGCTTCATCCAGAAATAATTGTACTGGTCTGGACAAAAGGAGTATTTTTTGTCTTAAGAGTACTCAGTTACATGCTTATAGCTCTGAAAGTGATGGAAGAAATGCTAGTGAAGATAAACATGTACATGTTAATGATGGAGCTGACATTGATAAGGGACAGAACCGACAAGAGAAGTATGGGAAAGATGTCACGTACTGCAATGCACATGCACAATTAGGAGAAGAGGATCAAGAGGAATGGCTTAATAAAGAGAAGCTTTCCGTAGAAAGTAAAAGGAGAGAATCACCATTTTTGACAAGAAGGGATAAGTTTAAAAATGAGTTTCTGAGAAGAATTGTTCCTTGGGAGAAGATAAACATTTCCTGGGACACATTCCCTTATCACATTCATGAGCATACAAAAAAACTTCTGGTGGAGTGTGCTGCTTCCCATTTGAGAAATAAGAAGTTTGCTTCATCTTTTGGCGCTCGCCTCACATCTTCAAGTGGGAGAATATTGCTTCAGAGCGTTCCTGGCACTGAGCTCTATCGTGAGAGATTAGTTAGAGCTCTCGCACGAGGTTTACAAGTTCCTCTATTAGTGCTTGATAGCAGCATTCTTGCTCCTTATGATATTGATGATGATTTATCATCCGACTATGAGTCCGATGATAATGGAGAATCTGGGGAAGAGGGTTCTCTGGAGTCAGAGAATGAGGATGATAATGATGCTAGTAATGAAGAAGAGTGGACTAGCAGTACTGAGGTGAAGTCAGATGCAAGTGATAATGAAGATGCACTAGCATCTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCGGCTGTTCAGAAACTTGTTCCTTACAATGTTGAAGAATTTGAAAAGATAACGTCTGGAGAATCTGAGTGTTCTGAGTCATCCAAGTCTAATGATGCCAAGTCTTCTGATAAATCTGGATGCCCGCTAAGAAAAGGTGACCGTGTGAAGTACAATGGGCCATCTGTTCGAATTACAGCTGATGATAGGGTCATACTGGGGAAGATACTGACATCTGATGGTCCAACTAATGCTTATACTATAATACATGGCAGGCCTTTAACTAATGGTCAGAGGGGAGAGGTATACGAGGTTAATGGGGATCGAGTTGCTGTTATCTTGGATATTACTGATGACAAGGCCAATGAGAGTGCGGTGGAGAACCTCAATGACGATCGTACAAAACCACCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATGCTCAATCACATGATTGCTACATAGCAGTGGAGGCTCTATGTGAGGTTTTACATTCCAAACAACCTCTTATTGTCTATTTTCCAGACAGCTCACATTGGTTGCATAAATCAGTTCCTAAGTCAAACCGAAGTGAGTTTTTTCATAAGGTCGAAGAGATGTTTGACCAGTTATCTGGCCCCATAGTGTTGATTTGTGGGCAAAACAAAGCTCAGTCAGGTTCAAAGGAGAAAGAACAATTTACAATGATACTTCCAAACTTTGGTCGCGTTGCTAAGCTGCCTCTTTCTCTTAAGCGTTTGACTGACGGATTCAAAGGAGAAAAGACATCAGAAGAAGATGAAATAAACAAGCTCTTCTCTAATGTTTTGTGTATACATCCACCTAAGGATGATAATATGTTGGCAACATTCAAGAAACAACTTGAGGAAGATAGGGAAATTGTGGTTGCACGTAGTAATTTGAATGAATTACGGAAGGTTCTTGAAGAACATCAGCTATTGTGCACGGACCTCTTGCATGTAAATACTGATGGCATCATTTTGACGAAGCAAAAAGCTGAAAAAGTGGTAGGCTGGGCCAAAAATTATTACTTGTCAAAATGTCTGCTTCCTTCTGTTAAAGGAGAAAGATTATGGCTACCTCGTGAAAGTCTTGAAATTGCAATCTCAAGGTTGAAGGGCTATGAAACTAATTCACGGAAGCCTTCTCAGAGCCTCAAGAACCTTGCGAAGGATGAGTTTGAGAGCAATTTCATTTCATCTGTAGTAGCTCCTGGTGAAATTGGAGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAGAAGGCACTTAAGGAACTTGTAATTCTTCCAATGAGAAGACCAGAGCTTTTCTCTCATGGAAACTTGTTGCGGCCCTGCAAAGGAATATTACTTTTTGGACCACCTGGAACTGGGAAAACTCTTCTGGCCAAGGCACTTGCCACTGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCAACTCTTACCTCAAAGGTAATTTTTATTCTGGCACATTTGGCTTTTCCAGTTGATAAGTCTCTTGCAACTAAAACTCGGAATGAAATTTGGTGGTTGGTCTACACAAGAATTAGGTTGTAG 2565 0.4051 MYLRRIQCRDRRWALVLQPSKYFFRPRFSDHPCFQSLPPKTSVKEYASHCSIIRRHILASDSSRHASSRNNCTGLDKRSIFCLKSTQLHAYSSESDGRNASEDKHVHVNDGADIDKGQNRQEKYGKDVTYCNAHAQLGEEDQEEWLNKEKLSVESKRRESPFLTRRDKFKNEFLRRIVPWEKINISWDTFPYHIHEHTKKLLVECAASHLRNKKFASSFGARLTSSSGRILLQSVPGTELYRERLVRALARGLQVPLLVLDSSILAPYDIDDDLSSDYESDDNGESGEEGSLESENEDDNDASNEEEWTSSTEVKSDASDNEDALASAEAALKKVKAAVQKLVPYNVEEFEKITSGESECSESSKSNDAKSSDKSGCPLRKGDRVKYNGPSVRITADDRVILGKILTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDITDDKANESAVENLNDDRTKPPIYWIHVKDIENDLDAQSHDCYIAVEALCEVLHSKQPLIVYFPDSSHWLHKSVPKSNRSEFFHKVEEMFDQLSGPIVLICGQNKAQSGSKEKEQFTMILPNFGRVAKLPLSLKRLTDGFKGEKTSEEDEINKLFSNVLCIHPPKDDNMLATFKKQLEEDREIVVARSNLNELRKVLEEHQLLCTDLLHVNTDGIILTKQKAEKVVGWAKNYYLSKCLLPSVKGERLWLPRESLEIAISRLKGYETNSRKPSQSLKNLAKDEFESNFISSVVAPGEIGVKFDDIGALEDVKKALKELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKVIFILAHLAFPVDKSLATKTRNEIWWLVYTRIRL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2296g00001 854 MobiDBLite consensus disorder prediction 274 306 - -
Gabi2296g00001 854 MobiDBLite consensus disorder prediction 274 322 - -
Gabi2296g00001 854 Gene3D - 742 820 IPR027417 -
Gabi2296g00001 854 MobiDBLite consensus disorder prediction 353 384 - -
Gabi2296g00001 854 Coils Coil 627 647 - -
Gabi2296g00001 854 MobiDBLite consensus disorder prediction 353 381 - -
Gabi2296g00001 854 MobiDBLite consensus disorder prediction 308 322 - -
Gabi2296g00001 854 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 743 820 IPR027417 -
Gabi2296g00001 854 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 168 820 - -
Gabi2296g00001 854 Pfam ATPase family associated with various cellular activities (AAA) 784 821 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2296g00001 Gabi-Chr2296 5160 19930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2296g00001 741 822 Calmodulin-binding Proteins AT3G56690 36.585 2.46e-08 55.8