Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2295g00007 ATGGTACCCATTTTTGAAAATGGAACGTTCAACAAGATTCTATCCTGCTGGAAGATTCCCTTCATATTCCTTTGGGTGGTCATTCTAACACTCTCTTCGCCTCAAGTTGCTGGTTATTCCAGAATCCCTTCTTTGGTCCCTGCTCCCACCACTGCTACGTTTCATGATCAAGCTGCAGCTGAAGACAGTGAAGCAAATGCTCTGTTAAAGTGGAAACACAGCCTTGAAAACCAAAGCCAATCTCTCTTGCCAACTTGGACAGGTACTACTACTCCATGCAAATGGGAAGGAATTCAGTGTGACAAATCCAAGTCAGTTTCCAGCATAAATCTTGCAAATTATGGTTTAAAAGGTACACTCCAAACTCTCAAATTTTCCTCATTGCCCAACCTCCTCAGCCTAAATATCTACAGTAACTTCTTTTATGGAACCATTCCCCCACAAATTGGTAACATGTCCAAAGTAAATGTTTTGAACTTTTCTGCAAATTCTTTTGATGGTTCCATCCCGAAAGAAATATGTACATTGAGGAGTTTGCGTAGGCTTGATCTTTCCATATGCCAACTAAGTGGACCAATTCCTAATTCCATAGCAAACTTGTCCAACCTATTATATCTAGATTTAGGAAGGAACAATATTTCTGGCTCCATTCCTCCGGAGATTGGAAAATTGAACAGCTTGAAGTTTCTAGGTATTGGAGTTAATGCCATTTTGGGTTCCATTCCCCAAGAAATTGGATTGTTGACAAAGCTTCGGTATATTGATATGTCACTTAACTCTCTCTCTGGTGCCATCCCCAAAACAATTGGTAACCTCAGCAGTTTAAATGAACTTTACCTTGCTAATAACACTATACTGTCTGGGCCAATCCCACCCTCTTTATGGAACATGTCTAACTTGACCATTCTCCATCTTTATGGCAATAATCTTTTTGGATCAATTCCTAATTCCATAGAAAACTTGGCCAATTTGGATGAACTTGTACTTAAAGCCAACCACTTTTCTGGATCCATCCCTTACACTGTTGGAAACTTGACAAAGCTCACCTCATTATACTTAGGCTCTAATGATCTTTCTGGATCAATTCCTCCATCGATAGGGAATCTGATCAATTTGAATGCCCTCAGTCTCCAAGAAAACAATCTCTCTGGATCTATTCCTGCAACAATTGGAAATTTGGTAAGGCTCACCATCCTGGCATTGTCCTCCAACAAACTTAGTGGTAGCATTCCAGAGGTCATGAATAACATTACCAACTTGAATAGGATGTTATTAGACAATAATGATTTCACTGGCCGCTTGCCACCTCAAGTCTGCTCTAGTGGGTCATTAGTGTTCTTCAATGCTCAACACAACCGTCTAACGGGTCCAGTACCTAGAAGCTTGAAGAACTGCTCTAGCATTCAAAGACTCAGGCTTGAGGGAAACCAACTAGAAGGAGATATAGAGCAAGATTTTCGTGAATATCCAAATTTGAAATATATTGATCTGAGTGACAATAAATTTTATGGCCACATTTCGCCAAACTGGGGGAAGTGCCCTAATCTTATTACCTTCAAGATATCCAACAACAGTATTTCTGGTGGTATACCTATAGAACTTGTTGAGGCAACCAACCTTGGCAGCCTTTACCTTTCTTCCAATCACTTGGTTGGAGAGATTCCAAAGGAGCTTGGGAAATTGAAGAACTTAGTGGAACTCTACATCAGCAACAATCATTTTTCAGGAAACATTCCCACAAAAATAGGATTACTGCAGAATCTTCTAGAGTTGGATCTAGCAGGAAACCAGTTGAATGGCACAATACCAAAGGAAGTCGTGAGTTTGCCCAAATTAGTGAAATTGAATTTGAGCAACAACAAAATAACAGGAAGCATTCCCTTTGAGTTTGGCAAATCACAATCTCTTGATACTCTTGATCTTAGCAGGAATTTGCTGAGTGGAATAATACCAACAGTGCTTGGAGGTATGATTCATTTGCAATGGTTGGATCTCTCACACAATAAGCTTTCTGGCACCATTCCATCCAGTTTTGATGACATGCCAGGCTTGATTTCGGTCAACATATCATACAATCAGTTAGAAGGGCCTCTTCCAAAAAATCAAGCCTTTCTTAATGCTCCAATTGAGTCATTGAAAAATAACAAAGGCTTGTGTGGTAACGTCTCTGGCTTGGTTCTTTGTCCAACCTACCACAGTCGAAAGAGCCACAAGGTGATCCTACAGGTACTATTCATCATCTTGGGTGCTCTAATACTAGTACTTTGTGGGGTTGGAGTTTCAATATGTATTCTTTGTCGAAGAGCAAGAAACAAAGAAATCCAGACTAAAGAAGCACAATCAGAAGAACTCTTTTCCATATGGAGTCATGATGGAAAAATGGTGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAAAAGGAGGACAAGGTTATGTTTACAAGGCTGAGTTGCCTTCGGGTCTGGTTTTTGCGGTGAAGAAAATTCATTCAGAAACAAATGGAGAGAAGCCCAATTTTAAAGCTTTTGAAAATGAAATTCAAGCTTTGACAGAGATCAGGCACCGTAACATCATAAAGCTGTATGGTTTTTGCTCACATTCAAGGTTCTCATTCTTGGTTTATAAGTTCTTAGAAGGTGGTAGCTTGGATCAGATACTAAACAATGACACACGAGCAAATGCATTTGATTGGGAAAAGAGGATGAATGTTGTTAAAGGTGTGGCCAATGCTTTATCTTACATGCATCATGACTGTTCACCTCCAATAATTCATTGTGACATATCAAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCTCATGTCTCTGATTTTGGGACAGCCAAGTTTCTTAAGCCTGATTCACAAAGTTGGACCACATGTGCTTACACATTTGGTTATGCTGCACCAGAGCTTGCCCAGACAATGAAAGTGAACGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTTCTCTAGAAATCCTAATGGGAAAGCATCCAGGAGATCTCATTTCTTCATTGTCATCATCATCAACAGCATCAATGACTTATGATTTGCTATTGATTGATGTGTTGGACGAACGGCCTCATCAACCTGTGAAGCCAATTGTTGGGGATGTCATCTTGATTGCAAGGTTGGCATTTTCTTGCTTGAATGAAAATCCATCTTCTCGCCCAACCATGGATCAAGTCTCTAAAGAGCTTGCGATGAGAAAATCACCTTTGAAGGACCAGTTCCCCTTGATCAAACTTGGACAACTCCAATAA 3291 0.3968 MVPIFENGTFNKILSCWKIPFIFLWVVILTLSSPQVAGYSRIPSLVPAPTTATFHDQAAAEDSEANALLKWKHSLENQSQSLLPTWTGTTTPCKWEGIQCDKSKSVSSINLANYGLKGTLQTLKFSSLPNLLSLNIYSNFFYGTIPPQIGNMSKVNVLNFSANSFDGSIPKEICTLRSLRRLDLSICQLSGPIPNSIANLSNLLYLDLGRNNISGSIPPEIGKLNSLKFLGIGVNAILGSIPQEIGLLTKLRYIDMSLNSLSGAIPKTIGNLSSLNELYLANNTILSGPIPPSLWNMSNLTILHLYGNNLFGSIPNSIENLANLDELVLKANHFSGSIPYTVGNLTKLTSLYLGSNDLSGSIPPSIGNLINLNALSLQENNLSGSIPATIGNLVRLTILALSSNKLSGSIPEVMNNITNLNRMLLDNNDFTGRLPPQVCSSGSLVFFNAQHNRLTGPVPRSLKNCSSIQRLRLEGNQLEGDIEQDFREYPNLKYIDLSDNKFYGHISPNWGKCPNLITFKISNNSISGGIPIELVEATNLGSLYLSSNHLVGEIPKELGKLKNLVELYISNNHFSGNIPTKIGLLQNLLELDLAGNQLNGTIPKEVVSLPKLVKLNLSNNKITGSIPFEFGKSQSLDTLDLSRNLLSGIIPTVLGGMIHLQWLDLSHNKLSGTIPSSFDDMPGLISVNISYNQLEGPLPKNQAFLNAPIESLKNNKGLCGNVSGLVLCPTYHSRKSHKVILQVLFIILGALILVLCGVGVSICILCRRARNKEIQTKEAQSEELFSIWSHDGKMVFENIIEATNNFDDKYLIGKGGQGYVYKAELPSGLVFAVKKIHSETNGEKPNFKAFENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQILNNDTRANAFDWEKRMNVVKGVANALSYMHHDCSPPIIHCDISSKNVLLDLEYEAHVSDFGTAKFLKPDSQSWTTCAYTFGYAAPELAQTMKVNEKCDVFSFGVLSLEILMGKHPGDLISSLSSSSTASMTYDLLLIDVLDERPHQPVKPIVGDVILIARLAFSCLNENPSSRPTMDQVSKELAMRKSPLKDQFPLIKLGQLQ 1096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2295g00007 1096 Pfam Leucine rich repeat N-terminal domain 62 101 IPR013210 -
Gabi2295g00007 1096 Gene3D Ribonuclease Inhibitor 416 726 IPR032675 -
Gabi2295g00007 1096 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 417 732 - -
Gabi2295g00007 1096 Gene3D Phosphorylase Kinase; domain 1 766 884 - -
Gabi2295g00007 1096 Pfam Leucine rich repeat 635 694 IPR001611 GO:0005515
Gabi2295g00007 1096 Pfam Leucine rich repeat 490 550 IPR001611 GO:0005515
Gabi2295g00007 1096 Pfam Leucine rich repeat 563 622 IPR001611 GO:0005515
Gabi2295g00007 1096 FunFam MDIS1-interacting receptor like kinase 2 isoform A 61 216 - -
Gabi2295g00007 1096 Gene3D Ribonuclease Inhibitor 311 415 IPR032675 -
Gabi2295g00007 1096 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 218 314 - -
Gabi2295g00007 1096 SUPERFAMILY RNI-like 329 694 - -
Gabi2295g00007 1096 Gene3D Transferase(Phosphotransferase) domain 1 885 1087 - -
Gabi2295g00007 1096 FunFam MDIS1-interacting receptor like kinase 2 885 1082 - -
Gabi2295g00007 1096 SMART LRR_sd22_2 609 630 - -
Gabi2295g00007 1096 SMART LRR_sd22_2 345 371 - -
Gabi2295g00007 1096 SMART LRR_sd22_2 248 274 - -
Gabi2295g00007 1096 SMART LRR_sd22_2 393 419 - -
Gabi2295g00007 1096 SMART LRR_sd22_2 297 323 - -
Gabi2295g00007 1096 Gene3D Ribonuclease Inhibitor 218 310 IPR032675 -
Gabi2295g00007 1096 Pfam Protein kinase domain 808 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00007 1096 ProSiteProfiles Protein kinase domain profile. 806 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00007 1096 Gene3D Ribonuclease Inhibitor 60 217 IPR032675 -
Gabi2295g00007 1096 Pfam Leucine Rich Repeat 178 200 IPR001611 GO:0005515
Gabi2295g00007 1096 Pfam Leucine Rich Repeat 299 321 IPR001611 GO:0005515
Gabi2295g00007 1096 Pfam Leucine Rich Repeat 347 369 IPR001611 GO:0005515
Gabi2295g00007 1096 PANTHER LEUCINE RICH REPEAT KINASE 2 342 1081 - -
Gabi2295g00007 1096 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 315 416 - -
Gabi2295g00007 1096 ProSitePatterns Tyrosine protein kinases specific active-site signature. 930 942 IPR008266 GO:0004672|GO:0006468
Gabi2295g00007 1096 SUPERFAMILY L domain-like 100 410 - -
Gabi2295g00007 1096 SMART LRR_typ_2 200 224 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 248 272 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 657 680 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 297 321 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 634 656 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 538 561 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 345 369 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 128 152 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 393 416 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 585 608 IPR003591 -
Gabi2295g00007 1096 SMART LRR_typ_2 609 632 IPR003591 -
Gabi2295g00007 1096 FunFam Leucine-rich repeat receptor protein kinase MSP1 769 884 - -
Gabi2295g00007 1096 SUPERFAMILY Protein kinase-like (PK-like) 789 1077 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2295g00007 Gabi-Chr2295 173425 177131 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2295g00007 58 978 Receptor kinase-like Gene Family AT4G08850 45.620 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2295g00007 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2295g00007 - - gmx:100815688 1519.21