Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2295g00005 ATGGTACCCATGTTTGAAAAGGGAACGTTCATCAAGATTCCAGCCTGCTGGAATATTCCCTTCATATTCATTTGGGTCAGTCTAACACTCTCTTCGCCTCAAGTTGCCGGTTTGATCTCTGCTGCCAACAGTGTTACAGTTCATGATCAATCTGCAGCTGAAGCCATTGAAGCAAATGCTCTGTTGAAGTGGAAAGACAGCCTTGACAACCACAGCCAAGAACTCTTGTCAACTTGGACAGATACTACTACTCCATGCAAATGGGATGCAATTCAGTGTGACAAATCCAAGTCAGTTTCCAGCATAAATCTAGCAAATTATGGTCTAAAAGGTACACTCCAAACTCTCAAATTTTCCTCATTGCCCAACCTCCTCAGCCTAAATATCTATAACAACAACTTTTATGGAGCCATTCCCCCACGTATTGGTAACATGTCCAAAGTAAAAGTTTTGAACTTTTCTGAAAATTCTTTTGATGGGTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTAGTCTTGATCTTTCCCTATGCCAACTTACTGGAGCAATTCCTAATTCCATAGCAAACTTGTCCAACCTATCATTTCTAGATTTAGGAACCAACAATATTTCTGGCTCCATTCCTCCGGAGATTGGAAAATTGAACAACTTAAATTATCTAAGTATTTCAGATAATAGCCTTTCTGGTTCCATTCCACGTGAAATTGGAATGTTGACAAACCTTAGGCTTATTACTTTGTCATTGAACTCTCTCTCTGGTACCATCCCAAAAACAATTGGTAACATGAGCGGTTTAAATGCACTTTACCTTGCTAATAACACTATGCTGTCTGGTTCAATCCCACCCTCCATATGGAACATGTCTAACTTGACCGCTCTCTTCCTTTATGGCAATAATCTTTCTGGATCAATCCCTGATTCCATAGAAAACTTGGCCAATTTGTATCAGCTTGGACTTAATGACAACCACCTTTCTGGATCCATCCCTTACACCATTGGAAACTTGACAAAGCTCACCTCGTTATTCTTGAGCTTTAATGATCTTTCTGGATCAATTCCTCCCTCTATAGGAAATCTGATCAATTTGGATTCCCTCGATCTCCAAGAAAACAATCTCTCTGGATCCATTCCAACCACAATTGGAAATTTGATAAGCCTCACCTGGCTAGGATTGGCCACCAACAAACTTAATGGTAGCATTCCACAGGTCATGAATAACATTACCAACTTCGATACCTTATTATTAAACAATAATGATTTCATTGGCCACTTGCCACCTCAAATCTGCTCTGGTGGGTCATTGACATACTTCAGTGCTCAACAAAACCGTTTCACGGGTCCAGTACCTAGAAGCTTGAAGAACTGCTCCAATATTCAAAGACTCAGGCTTGAGGGAAACCAACTGGAAGGAGATATAGAGCAAGATTTTGGTGTATATCCGATTTTGAAATATATTGATCTGAGTGACAATAAATTTTATGGCCACATTTCGCCAAACTGGGGGAAGTGCTCTAAACTTGATAACTTCATGATATCCAACAACAACATTTCTGGCGGTATACCTGTACAACTTGTTGAGGCAACCAACCTTGGCAGGCTTCACCTTTCATCCAATCACTTGATGGGAGAGATTCCAAAGGAACTTGGAAATTTGAAAAAATTAGTTGAACTCAACATCAGCAACAATCATTTTTCAAGAAACATTCCCACAGAATTAGGATTGCTACATAATCTTCAACTGTTGGATCTAGCAGGAAACGAGTTGAGTGGCACAATACCAGAGCAAATTGTGGGGTTACCCAATTTACTGGAATTGAATTTGAGCAACAATCAATTAAAGGGAAGCATTCCCTTTGAGTTTGACAGATTACAACCTCTTGAAACTCTTGATCTTAGCAGGAATTTGTTGAGTGGAACAATACCAACAGTGCTTGGAGATTTGAATCATTTGCAATGGTTGAATCTCTCACACAATAATCTTTCTGGCACCATTCCATCCAGTTTTAACCAAATGTCTGCCTTGATTTCTGTCGACATATCATACAACCAGTTAGAAGGGACTCTTCCAAAAAATAAAGCCTTTCTTAATGCTCCAATTGAATCATTGAAAAATAACAAAGGCTTGTGTGGTAACGTTACTGGCTTGATGCTTTGCCCAACCAATAGCAATCAAAAGAGACACAAGGTGATCCTACAGGTACTATTCATTATCTTGGGTGCTCTAATACTTGTACTTTGTGGGGTTGGAGTTTCAATATGTATTCTTTGTCGAAGAGCAAGAAACAAAGAAATCCAGACTAAAGAAGCACAATCAGAAGAACTCTTTTCCATATGGAGTCATGATGGAAAAATGATGTTTGAAAATATCATTGAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAAAGGGAGGACAAGGTTATGTTTTCAAGGCTGAGTTGCCTTCGGGTCTGGTTTTTGCGGTGAAGAAAATTCATTCAGAAACAAATGGAGAGAAGTCCAATTTTAAAGCTTATGAAAATGAAATTCAAGCTTTGACAGAAATCAGGCACCGTAACATCATAAAACTGTATGGTTTTTGCTCACATTCACGGTTCTCATTCTTGGTTTACAAGTTCTTGGAAGGTGGTAGCTTGGATCAGATACTAAACAATGACACACTAGCAATTGCATTTGATTGGGAAAAGAGGGTGAATGTCGTTAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGACTGTTCACCTCCAATAATTCATCGTGACATATCGAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCACACGTCTCTGATTTTGGGACAGCCAAGTTTCTTAAGCCTGATTCACAAAGTTGGACCACATGTGCTTACACCCTTGGTTATGCTGCACCAGAGCTTGCCCAGACTATGAAAGCGAACGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTTCTTTAGAAATCCTAATGGGAAAGCATCCAGGAGATCTCATTTCTTCGTTGTCATCATCATCTACAACATCAATGAGTTATGATTTGCTATTGATTGATGTGTTGGACGAACGGCCTCATCAACCTGTGAAGCCAATTGTTGGGGATGTCATCTTGATTGCAAGGTTGGCATTTTCTTGCTTGAATGAAAATCCATCTTCTCGCCCAACCATGGATCAAGTCTCTAAAGAGCTTGCGATGAGAAAATCACCTTTAGAGGACCAGTTCCCCTTGATCAAACTTGGACAACTCCAATAA 3270 0.3939 MVPMFEKGTFIKIPACWNIPFIFIWVSLTLSSPQVAGLISAANSVTVHDQSAAEAIEANALLKWKDSLDNHSQELLSTWTDTTTPCKWDAIQCDKSKSVSSINLANYGLKGTLQTLKFSSLPNLLSLNIYNNNFYGAIPPRIGNMSKVKVLNFSENSFDGSIPKEIWTLRSLRSLDLSLCQLTGAIPNSIANLSNLSFLDLGTNNISGSIPPEIGKLNNLNYLSISDNSLSGSIPREIGMLTNLRLITLSLNSLSGTIPKTIGNMSGLNALYLANNTMLSGSIPPSIWNMSNLTALFLYGNNLSGSIPDSIENLANLYQLGLNDNHLSGSIPYTIGNLTKLTSLFLSFNDLSGSIPPSIGNLINLDSLDLQENNLSGSIPTTIGNLISLTWLGLATNKLNGSIPQVMNNITNFDTLLLNNNDFIGHLPPQICSGGSLTYFSAQQNRFTGPVPRSLKNCSNIQRLRLEGNQLEGDIEQDFGVYPILKYIDLSDNKFYGHISPNWGKCSKLDNFMISNNNISGGIPVQLVEATNLGRLHLSSNHLMGEIPKELGNLKKLVELNISNNHFSRNIPTELGLLHNLQLLDLAGNELSGTIPEQIVGLPNLLELNLSNNQLKGSIPFEFDRLQPLETLDLSRNLLSGTIPTVLGDLNHLQWLNLSHNNLSGTIPSSFNQMSALISVDISYNQLEGTLPKNKAFLNAPIESLKNNKGLCGNVTGLMLCPTNSNQKRHKVILQVLFIILGALILVLCGVGVSICILCRRARNKEIQTKEAQSEELFSIWSHDGKMMFENIIEATNNFDDKYLIGKGGQGYVFKAELPSGLVFAVKKIHSETNGEKSNFKAYENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQILNNDTLAIAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDLEYEAHVSDFGTAKFLKPDSQSWTTCAYTLGYAAPELAQTMKANEKCDVFSFGVLSLEILMGKHPGDLISSLSSSSTTSMSYDLLLIDVLDERPHQPVKPIVGDVILIARLAFSCLNENPSSRPTMDQVSKELAMRKSPLEDQFPLIKLGQLQ 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2295g00005 1089 SMART LRR_sd22_2 193 222 - -
Gabi2295g00005 1089 SMART LRR_sd22_2 338 364 - -
Gabi2295g00005 1089 SMART LRR_sd22_2 626 652 - -
Gabi2295g00005 1089 SMART LRR_sd22_2 290 316 - -
Gabi2295g00005 1089 SMART LRR_sd22_2 578 604 - -
Gabi2295g00005 1089 ProSiteProfiles Leucine-rich repeat profile. 652 674 IPR001611 GO:0005515
Gabi2295g00005 1089 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 410 725 - -
Gabi2295g00005 1089 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 284 379 - -
Gabi2295g00005 1089 FunFam Leucine-rich repeat receptor protein kinase MSP1 762 877 - -
Gabi2295g00005 1089 Gene3D Ribonuclease Inhibitor 302 405 IPR032675 -
Gabi2295g00005 1089 FunFam Nuclear pore complex protein NUP107 54 209 - -
Gabi2295g00005 1089 Gene3D Ribonuclease Inhibitor 406 723 IPR032675 -
Gabi2295g00005 1089 Gene3D Ribonuclease Inhibitor 55 203 IPR032675 -
Gabi2295g00005 1089 Gene3D Ribonuclease Inhibitor 204 301 IPR032675 -
Gabi2295g00005 1089 Pfam Leucine rich repeat 556 615 IPR001611 GO:0005515
Gabi2295g00005 1089 Pfam Leucine rich repeat 623 663 IPR001611 GO:0005515
Gabi2295g00005 1089 SUPERFAMILY RNI-like 379 693 - -
Gabi2295g00005 1089 SUPERFAMILY Protein kinase-like (PK-like) 782 1070 IPR011009 -
Gabi2295g00005 1089 SMART LRR_typ_2 193 217 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 338 361 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 290 314 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 626 649 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 554 577 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 602 625 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 650 673 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 362 386 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 578 601 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 674 699 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 121 145 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 241 265 IPR003591 -
Gabi2295g00005 1089 SMART LRR_typ_2 169 192 IPR003591 -
Gabi2295g00005 1089 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 377 1071 - -
Gabi2295g00005 1089 FunFam MDIS1-interacting receptor like kinase 2 878 1075 - -
Gabi2295g00005 1089 Pfam Leucine rich repeat N-terminal domain 57 94 IPR013210 -
Gabi2295g00005 1089 Pfam Leucine Rich Repeat 171 193 IPR001611 GO:0005515
Gabi2295g00005 1089 ProSiteProfiles Protein kinase domain profile. 799 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00005 1089 Pfam Protein kinase domain 801 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00005 1089 ProSitePatterns Tyrosine protein kinases specific active-site signature. 923 935 IPR008266 GO:0004672|GO:0006468
Gabi2295g00005 1089 SUPERFAMILY RNI-like 101 409 - -
Gabi2295g00005 1089 Gene3D Transferase(Phosphotransferase) domain 1 878 1080 - -
Gabi2295g00005 1089 Gene3D Phosphorylase Kinase; domain 1 759 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2295g00005 Gabi-Chr2295 121011 124638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2295g00005 34 971 Receptor kinase-like Gene Family AT4G08850 45.226 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2295g00005 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2295g00005 - - gmx:100815688 1475.69