Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2295g00003 ATGGTACCCATGTTTGAAAATGGAACGTTCATCAAGATTCTAGCCTGCTGGAAGATTCCCTTCGTATTCCTTTGGGTCATTCTAACACTCTCTTCGCCTCAAGTTGCTGGTTTTCCCAGAATCCCTTCTTTGGTCCCTGCTCCCACCACTGCTACTTTTCATGATCAAGCTGTAGCTGAAGAAAGTGAAGCAAATGCTCTGTTAAAGTGGAAACACAGCCTTGAAAACCAAAGCCAAACTCTCTTGCCAACTTGGACGGGTACTACTAGTCCATGCAAATGGGAGGGAATTCAGTGCGACAAATCCGAGTCTGTCTCCAGCATAAATCTTGAAAATTATCTTCTGAAAGGTACACTCCAAACTCTCAGCTTCTCCTCATTGCCCAACCTCCTCAGGCTTAATATCTGCAACAACTCCTTTTATGGAACCATCCCCCCACAAATTGGTAACATGTCCAAAGTAATAGATTTGAACTTGTCTACAAATACTTTCCATGGTTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTGGGCTTGATCTTTCCATATGCCAACTAAGTGGAGCAATTCCTAATTCCATTGCAAACTTGACCAACCTATCATATCTAGATTTAGGAACCAACAATATTTCCGGCTCCATTCCTCCGGAGATTGGAAAATTGAACAACTTAAAGCATCTAAGCATTTCAGATAATAACCTTTTCGGTTCCATTCCCCAAGAAATTGGAGTGTTGACAAAGCTTCGGTATATTGATCTTTATAGCAATAATCTTTCTGGACCAATCCCTACTTCCATAGAAAATTTGTCCAATTTGGAAGACCTTGAACTTGATGGCAACCAACTTTCTGGTTCCATCCCTTACACCATCGGAAACTTGACAAAGCTCACCATGTTATCCCTGAGCTATAATGATCTTTCTGGATCAATTCCTCCCTCCATAGGAAATTTGATCAATTTGGTTTCTCTCGATCTCCATGCAAATAATCTCTCAGGATCTATTCCAACCACAATTGGAAATTTGATAAGCCTCACCTGGCTAGGATTGTCCGTCAACAAACTTAATGGTAGCATTCCACAGGTCATGAATAACATTACCAACTTGAATTCCTTGTTCTTAGACAATAATGATTTCACTGGCCACTTGCCACCTCTAATCTGCTTTGGTGGGTCATTGGAGTACTTCACTGCTCAATTCAACCGTTTAACGGGTCCAATACCTAGAAACTTGAAGAGCTCCTCCAGTATTGCTCAACTCGCGCTTCAGGGAAACCAACTGCAAGGAGATTTAGAGCAAGATTTTGGTGTATATCCGAATTTGAATTATATTGATCTGAGTGATAATAAATTTTATGGCCACATTTCGCCAAACTGGGGGAAGTGCCCTAATCTTATTACCTTCAAGATATCCAACAACAATATTTCTGGTGGTATACCTGTACAACTTGTTGGGGCATCCAACCTTGGCAGTCTTCACCTTTCTTCCAATCACTTGGTGGGAGAGATTCCGAAGGAGCTTGGGAATTTGAAGGACTTAGTGGAACTCTACATTAGCAACAATCATTTTTCAGGAAACATTCCCACAGAAATAGGATTACTGCAGAATCTTCTAGAGTTGGATCTAGCAGGAAACCAGTTGAATGGCACAATACCAAAGGAAGTCGTGAGTTTTCCCAAACTAGTGAAATTGAATTTGAGCAACAACAAAATAACAGGAAGCATTCCCTTTGAGTTTGGCAAATCACAATCTCTTGATACTCTTGATCTTAGCAGGAATTTGCTGAGTGGAATAATACCAACAGTGCTTGGAGGTATGATTCATTTGCAATGGTTGGATCTCTCACACAATAATCTTCATGGCGCCATTCCATCCAGTTTTGATGACATGCCAGGCTTGATTTCGGTCAACATATCATACAATCAGTTAGAAGGGCCTCTTCCAAAAAATCAAGCCTTTCTTAATGCTCCAATTGAGTCATTGAAAAATAACAAAGGCTTGTGTGGTAACGTCTCTGGCTTGGTTCTTTGTCCAACCTACCACAGTCGAAAGAGCCACAAGGTGATCCTTCAGGTACTATTCATCATCTTGGGTGCTCTAATACTAGTACTTTGTGGGGTTGGAGTTTCAATATGTATTCTTTGTCGAAGAGCAAGAAACAAAGAAATCCAGACTAAAGAAGCACAATCAGAAGAATTCTTTTCCATATGGAGTCATGATGGAAAAATGGTGTTTGAAAATATCATTGGAGCTACCAATAATTTTGATGACAAATATCTCATTGGAAAGGGAGGACAAGGTTATGTTTACAAGGCTGAGTTGCCTTCGGGTCTGGTTGTTGCGGTGAAGAAAATTCATTCAGAAACAAATGGAGAGAAGCCCAACTTTAAAGCTTTTGAAAATGAAATTCAAGCTTTGACAGAAATCAGGCACCGTAACATCATAAAGCTATATGGATTTTGCTCACATTCACGGTTCTCATTCTTGGTTTACAAGTTTTTGGAAGGTGGTAGCTTGGATCAGATACTAAACAATGACACACTAGCAATTGCATTTGATTGGGAAAAGAGGGTGAATGTCGTTAAAGGTGTGGCCAATGCTTTATCTTATATGCATCATGACTGTTCACCTCCAATAATTCATCGTGACATATCGAGCAAGAATGTTCTTTTGGATTTAGAATATGAAGCACACGTCTCTGATTTTGGGACAGCCAAGTTTCTTAAGCCTGATTCACAAAGTTGGACCACATGTGCTTACACCCTTGGTTATGCTGCACCAGAGCTTGCCCAGACAATGAAAATGAACGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTTCTTTAGAAATCCTAATGGGAAAGCATCCAGGAGATCTCATTTCTTCGTTGTCATCATCATCTACAACATCAATGAGTTATGATTTGCTATTGATTGATGTGTTGGACGAACGGCCTCATCAACCTGTGAAGCCAATTGTTGGGGATGTCATCTTGATTGCAAGGTTGGCATTTTCTTGCTTGAATGAAAATCCATCTTCTCGCCCAACCATGGATCAAGTCTCTAAAGAGCTTGCGATGAGAAAATCACCTTTAGAGGACCAGTTCCCCTTGATCAAACTTGGACAACTCCAATAA 3141 0.404 MVPMFENGTFIKILACWKIPFVFLWVILTLSSPQVAGFPRIPSLVPAPTTATFHDQAVAEESEANALLKWKHSLENQSQTLLPTWTGTTSPCKWEGIQCDKSESVSSINLENYLLKGTLQTLSFSSLPNLLRLNICNNSFYGTIPPQIGNMSKVIDLNLSTNTFHGSIPKEIWTLRSLRGLDLSICQLSGAIPNSIANLTNLSYLDLGTNNISGSIPPEIGKLNNLKHLSISDNNLFGSIPQEIGVLTKLRYIDLYSNNLSGPIPTSIENLSNLEDLELDGNQLSGSIPYTIGNLTKLTMLSLSYNDLSGSIPPSIGNLINLVSLDLHANNLSGSIPTTIGNLISLTWLGLSVNKLNGSIPQVMNNITNLNSLFLDNNDFTGHLPPLICFGGSLEYFTAQFNRLTGPIPRNLKSSSSIAQLALQGNQLQGDLEQDFGVYPNLNYIDLSDNKFYGHISPNWGKCPNLITFKISNNNISGGIPVQLVGASNLGSLHLSSNHLVGEIPKELGNLKDLVELYISNNHFSGNIPTEIGLLQNLLELDLAGNQLNGTIPKEVVSFPKLVKLNLSNNKITGSIPFEFGKSQSLDTLDLSRNLLSGIIPTVLGGMIHLQWLDLSHNNLHGAIPSSFDDMPGLISVNISYNQLEGPLPKNQAFLNAPIESLKNNKGLCGNVSGLVLCPTYHSRKSHKVILQVLFIILGALILVLCGVGVSICILCRRARNKEIQTKEAQSEEFFSIWSHDGKMVFENIIGATNNFDDKYLIGKGGQGYVYKAELPSGLVVAVKKIHSETNGEKPNFKAFENEIQALTEIRHRNIIKLYGFCSHSRFSFLVYKFLEGGSLDQILNNDTLAIAFDWEKRVNVVKGVANALSYMHHDCSPPIIHRDISSKNVLLDLEYEAHVSDFGTAKFLKPDSQSWTTCAYTLGYAAPELAQTMKMNEKCDVFSFGVLSLEILMGKHPGDLISSLSSSSTTSMSYDLLLIDVLDERPHQPVKPIVGDVILIARLAFSCLNENPSSRPTMDQVSKELAMRKSPLEDQFPLIKLGQLQ 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2295g00003 1046 SUPERFAMILY Protein kinase-like (PK-like) 742 1027 IPR011009 -
Gabi2295g00003 1046 Gene3D Transferase(Phosphotransferase) domain 1 835 1037 - -
Gabi2295g00003 1046 Gene3D Phosphorylase Kinase; domain 1 716 834 - -
Gabi2295g00003 1046 Pfam Leucine rich repeat 249 308 IPR001611 GO:0005515
Gabi2295g00003 1046 Pfam Leucine rich repeat 585 644 IPR001611 GO:0005515
Gabi2295g00003 1046 Pfam Leucine rich repeat 440 500 IPR001611 GO:0005515
Gabi2295g00003 1046 Pfam Leucine rich repeat 514 572 IPR001611 GO:0005515
Gabi2295g00003 1046 ProSitePatterns Tyrosine protein kinases specific active-site signature. 880 892 IPR008266 GO:0004672|GO:0006468
Gabi2295g00003 1046 FunFam MDIS1-interacting receptor like kinase 2 isoform A 60 215 - -
Gabi2295g00003 1046 Gene3D Ribonuclease Inhibitor 215 310 IPR032675 -
Gabi2295g00003 1046 Gene3D Ribonuclease Inhibitor 535 675 IPR032675 -
Gabi2295g00003 1046 Gene3D Ribonuclease Inhibitor 59 214 IPR032675 -
Gabi2295g00003 1046 ProSiteProfiles Protein kinase domain profile. 756 1028 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00003 1046 Gene3D Ribonuclease Inhibitor 311 414 IPR032675 -
Gabi2295g00003 1046 Gene3D Ribonuclease Inhibitor 415 533 IPR032675 -
Gabi2295g00003 1046 SMART LRR_sd22_2 535 556 - -
Gabi2295g00003 1046 SMART LRR_sd22_2 247 273 - -
Gabi2295g00003 1046 SMART LRR_sd22_2 199 228 - -
Gabi2295g00003 1046 SMART LRR_sd22_2 295 321 - -
Gabi2295g00003 1046 SMART LRR_typ_2 319 343 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 607 630 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 367 391 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 127 151 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 271 294 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 223 247 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 584 606 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 295 318 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 535 559 IPR003591 -
Gabi2295g00003 1046 SMART LRR_typ_2 199 222 IPR003591 -
Gabi2295g00003 1046 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 216 314 - -
Gabi2295g00003 1046 FunFam Leucine-rich repeat receptor protein kinase MSP1 719 834 - -
Gabi2295g00003 1046 Pfam Protein kinase domain 758 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00003 1046 Pfam Leucine Rich Repeat 225 246 IPR001611 GO:0005515
Gabi2295g00003 1046 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 367 682 - -
Gabi2295g00003 1046 Pfam Leucine rich repeat N-terminal domain 61 100 IPR013210 -
Gabi2295g00003 1046 SUPERFAMILY RNI-like 107 450 - -
Gabi2295g00003 1046 SUPERFAMILY L domain-like 415 670 - -
Gabi2295g00003 1046 PANTHER LEUCINE RICH REPEAT KINASE 2 291 1031 - -
Gabi2295g00003 1046 FunFam MDIS1-interacting receptor like kinase 2 835 1032 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2295g00003 Gabi-Chr2295 55712 59312 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2295g00003 50 928 Receptor kinase-like Gene Family AT4G08850 44.662 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2295g00003 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2295g00003 - - gmx:100814634 1326.23