Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2295g00001 ATGGCACCAATGTTTGAAAGGAGAAAGTCCACCAAGATTCTCTTCATAATTATCTGTGTCCTTCTAACACTCTGGTTAACCCAAGTTGCTGGTTTTTCCAAAATTGCTTCTTTAGCCACCACTGCTACTGTTTATGCTGAAGACAGTGAAGCAAATGCTCTGTTGAAGTGGAAAGACAGCCTAGACAACCACAGCCAAACACTCTTGTCTAGTTGGACAGCTACTACTACTCCATGCAAATGGGAAGCAATTCAGTGTGACAAATCCAAGTCAGTCTCCAGCATAAATCTTGAAAATTATGGACTGAAAGGTACACTCCAAGCTCTCAAATTTTCCTCATTGCCCAACCTTCTCAGCCTAAATATCTACAATAACTTCTTTTATGGAACCATTCCCCAACAAATTGCTAACATGTCCAAAGTAAATGTTTTGAACTTTTCTTCAAATTCTTTCCATGGTTCCATCCCTAAAGAAATATGGACATTGAGGAGTTTGCGTAGGCTTGATCTTGCCATATGCAAACTAAGTGGAATAATTCCTAATTCCATAGCAAACTTGTCCAACCTAGCATATCTAGATTTAGGAAGCAACAATATTTCTGGCTCCATTCCTCCGGAGATTGGAAAATTGAACAACTTGGAGTATCTACGTATTGCATTTAATAAGCTTTTCGATTCCATTCCCCAAGAAATTGGAATGTTGACAAAGCTTCGGTTTATTGATATGTCAGTGAACTCTCTCTCTGGTGCCATCCCCAAAACAATTGGTAACATGAGCAGTTTAAATAGACTTTACCTTGCTAATAACACTCTGTCTGGGCCAATCCCACCCTCCTTATGGAACATGTCTAACTTGACCATTCTCCATCTTTATAACAATATTCTTTCTGGATCAATCCCTGATTCCATGGAGAACTTGGCCACTTTGGAAGAACTTGAACTTGATCACAACCACCTTTCTGAACCCATTCCTTACACCGTTGGAAACTTGACAAAGCTCACCTCATTATACTTGAGCTTTAATGATTTTTCTGGATCCATTCCTTCATCGATATGGAATCTGATCAATTTGGATTCCCTCAGTCTCCAAGGAAACAATCTCTCGGGATCTATTCCTGCAACAATTGGAAATTTGGTAAGGCTCACCATCTTGGAATTGTCCTTCAACAAACTTAATGGTAGCATTCCAGAGGTCATGAATAACATTACAAACTGGTATTCCTTGTTATTATCTGATAATGATTTCACTGGCCACTTGCCACCTCAAATCTGCTCTGGTGGGTTATTGCTGTTCTTCGGTGCTGAACTCAACCGTTTCACGGGTCCAGTACCAAGAAGCTTGAAGAACTGCTCCAGTATTCAAAGACTCAGGCTTGAGCGAAACCAACTGGAAGGAGATATAGAGCAAGATTTTGGTGTATATCCGAATTTGGAATATATTGATCTGAGTGACAATAAATTTTATGGCCACATTTCGCCAAACTGGGGGAAGTGCCCTAATCTTAATACCTTCAAGATATCCAACAACAATATTTCCGGTGGTATACCTGTACAACTTGTTGAGGCAACTAACCTTGGCAGTCTTTACCTTTCTTCCAATCACTTGGTGGGAGAGATTCCGATGGAACTTGGGAATTTGAAAAAATTAGTTGAACTCCGCATCAGCAACAATCATTTTTCAGGAAACATTCCCACAAAATTGGGATTACTGCAGAATCTTCTACAGTTGGATCTAGCAGGAAACCAGTTGAATGGCACAATACCAAAGGAAGTTGCGAGTTTACCCAAATTAGTGGGATTGAATTTGAGCAACAACAATATAAATGGAAGCATTCCTTTTGAGTTTAGCAAATCACAGTCTCTTGAATCTCTTGATCTTAGTTGGAATTTGCTGAGTGGAACAATACCAACAATCCTTGGAGATTTGAATCATTTGCAATGGTTGAATCTCTCACACAATAATCTTTCTGGCACCATTCCATCCAGTTTTGACCAAATGTCAGGCTTGATTTCTGTCAACATATCCTACAACCAATTAGAAGGGCCTCTTCCAAAAAATCAAGCCTTTCTTAATGCTCCAATTGAATCATTGGAAAATAACAAAGGCTTGTGTGGTAACATTACAGGCTTGGTTATTTGTCTAACCAACCACAGTCGAAAGAGCAACAAAGTCATCCTAATAGTATTCCCTATTTTGGGAACTCTAGTGTTTTGTGTGGTGGGGCTTTTGATGTATATTCTTTGTCGAAGTAAGAGAAAGGAAGAAAGCAACTCCAAAGAAGCACAAAGGGAAGGAGTCTTTTCCGTATGGAGTTATGATGGAAAAATCATGTTTGAAAATATCATTGAAGCTACAGAGAATTTTCATGACAAATATCTAATTGGAGTGGGAGGTCAAGGATATGTTTACAAGGCTGTGTTGCCCGCAGGCCTTGTTGTTGCTGTCAAAAAACTCCATTCAGTAACAGATGAGGATATGTCTGACTACAGTTCAAAGGCTTTTACTAGTGAGATTCAGATCTTGATAGAAATCAAACACAGGAACATTGTCAATCTTCATGGATTTTGCTCACATTCACAGTTCTCATTTTTGGTTTATAAGTTCTTGGAAGGGGGTAGCTTGGATCAGATACTAAACAATGACACACAAGCAATTGCATTTGATTGGGAAAAGAGGGTGAATGTTGTTAAAGGTGTGGCTAATGCTTTATCCTATCTACATCATGACTGCACACCTCCTATAGTTCATCGTGACATATCAAGCAAGAATGTTCTCCTAGATCCTCAATATGAAGCTCATGTCTCTGACTTCGGTACAGCTAAGTTTCTAAAGCCTGGTTCACATAATTGGACCACATTTGCAGGCACCTTTGGTTATGCTGCTCCAGAGCTTGCTCAGACAATGGAAGTGAATGAGAAATGTGATGTTTTCAGTTTTGGAGTACTTGCTTTGGAAATCATAATGGGAAAGCATCCGGGAGATCTCATCTCTTTATTTTTGTCACCATCTACAGCACCAACGGCTAATGATCTGTTATTGATTGATGTTATAGATCAAAGAACTACTGAACCTACGGAACCAATTGATGGTGAGGTGGTGTTGATTGCAAGGTTGGCATTTGCTTGCTTGAGTGAAACTCCAAGTTCTCGCCCAACCATGGATCAAGTATCTAAGGCGCTTGTAATAGGAAAATCACCTTTAGCTGACCAGTTTCCCATGATCAAACTAGGACTACTTCACTGA 3243 0.3959 MAPMFERRKSTKILFIIICVLLTLWLTQVAGFSKIASLATTATVYAEDSEANALLKWKDSLDNHSQTLLSSWTATTTPCKWEAIQCDKSKSVSSINLENYGLKGTLQALKFSSLPNLLSLNIYNNFFYGTIPQQIANMSKVNVLNFSSNSFHGSIPKEIWTLRSLRRLDLAICKLSGIIPNSIANLSNLAYLDLGSNNISGSIPPEIGKLNNLEYLRIAFNKLFDSIPQEIGMLTKLRFIDMSVNSLSGAIPKTIGNMSSLNRLYLANNTLSGPIPPSLWNMSNLTILHLYNNILSGSIPDSMENLATLEELELDHNHLSEPIPYTVGNLTKLTSLYLSFNDFSGSIPSSIWNLINLDSLSLQGNNLSGSIPATIGNLVRLTILELSFNKLNGSIPEVMNNITNWYSLLLSDNDFTGHLPPQICSGGLLLFFGAELNRFTGPVPRSLKNCSSIQRLRLERNQLEGDIEQDFGVYPNLEYIDLSDNKFYGHISPNWGKCPNLNTFKISNNNISGGIPVQLVEATNLGSLYLSSNHLVGEIPMELGNLKKLVELRISNNHFSGNIPTKLGLLQNLLQLDLAGNQLNGTIPKEVASLPKLVGLNLSNNNINGSIPFEFSKSQSLESLDLSWNLLSGTIPTILGDLNHLQWLNLSHNNLSGTIPSSFDQMSGLISVNISYNQLEGPLPKNQAFLNAPIESLENNKGLCGNITGLVICLTNHSRKSNKVILIVFPILGTLVFCVVGLLMYILCRSKRKEESNSKEAQREGVFSVWSYDGKIMFENIIEATENFHDKYLIGVGGQGYVYKAVLPAGLVVAVKKLHSVTDEDMSDYSSKAFTSEIQILIEIKHRNIVNLHGFCSHSQFSFLVYKFLEGGSLDQILNNDTQAIAFDWEKRVNVVKGVANALSYLHHDCTPPIVHRDISSKNVLLDPQYEAHVSDFGTAKFLKPGSHNWTTFAGTFGYAAPELAQTMEVNEKCDVFSFGVLALEIIMGKHPGDLISLFLSPSTAPTANDLLLIDVIDQRTTEPTEPIDGEVVLIARLAFACLSETPSSRPTMDQVSKALVIGKSPLADQFPMIKLGLLH 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2295g00001 1080 ProSiteProfiles Protein kinase domain profile. 788 1062 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00001 1080 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 402 717 - -
Gabi2295g00001 1080 Gene3D Transferase(Phosphotransferase) domain 1 869 1066 - -
Gabi2295g00001 1080 FunFam Leucine-rich repeat receptor protein kinase MSP1 751 868 - -
Gabi2295g00001 1080 Pfam Leucine rich repeat N-terminal domain 48 87 IPR013210 -
Gabi2295g00001 1080 Gene3D Ribonuclease Inhibitor 300 401 IPR032675 -
Gabi2295g00001 1080 SMART LRR_typ_2 594 617 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 330 354 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 306 329 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 378 402 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 642 665 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 570 593 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 186 210 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 162 185 IPR003591 -
Gabi2295g00001 1080 SMART LRR_typ_2 258 282 IPR003591 -
Gabi2295g00001 1080 SUPERFAMILY L domain-like 64 420 - -
Gabi2295g00001 1080 Pfam Leucine rich repeat 475 535 IPR001611 GO:0005515
Gabi2295g00001 1080 Pfam Leucine rich repeat 283 343 IPR001611 GO:0005515
Gabi2295g00001 1080 Pfam Leucine rich repeat 163 223 IPR001611 GO:0005515
Gabi2295g00001 1080 Pfam Leucine rich repeat 620 679 IPR001611 GO:0005515
Gabi2295g00001 1080 ProSitePatterns Tyrosine protein kinases specific active-site signature. 914 926 IPR008266 GO:0004672|GO:0006468
Gabi2295g00001 1080 Gene3D Ribonuclease Inhibitor 48 200 IPR032675 -
Gabi2295g00001 1080 Gene3D Ribonuclease Inhibitor 402 711 IPR032675 -
Gabi2295g00001 1080 SMART LRR_sd22_2 378 404 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 330 356 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 186 215 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 570 593 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 282 308 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 234 260 - -
Gabi2295g00001 1080 SMART LRR_sd22_2 618 644 - -
Gabi2295g00001 1080 FunFam MDIS1-interacting receptor like kinase 2 869 1066 - -
Gabi2295g00001 1080 Gene3D Phosphorylase Kinase; domain 1 748 868 - -
Gabi2295g00001 1080 Pfam Protein kinase domain 788 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2295g00001 1080 ProSiteProfiles Leucine-rich repeat profile. 644 666 IPR001611 GO:0005515
Gabi2295g00001 1080 PANTHER LEUCINE RICH REPEAT KINASE 2 351 1064 - -
Gabi2295g00001 1080 FunFam Piriformospora indica-insensitive protein 2 300 395 - -
Gabi2295g00001 1080 FunFam MDIS1-interacting receptor like kinase 2 isoform A 47 203 - -
Gabi2295g00001 1080 Gene3D Ribonuclease Inhibitor 201 299 IPR032675 -
Gabi2295g00001 1080 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 206 299 - -
Gabi2295g00001 1080 SUPERFAMILY L domain-like 437 705 - -
Gabi2295g00001 1080 SUPERFAMILY Protein kinase-like (PK-like) 773 1060 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2295g00001 Gabi-Chr2295 10018 13536 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2295g00001 6 962 Receptor kinase-like Gene Family AT4G08850 43.357 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gabi2295g00001 Pkinase 5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2295g00001 - - gmx:100815688 1453.34