Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2293g00006 ATGGAGAGGGAATTTTTTGGCTTGAGTTCCAAATATGGTGATGCTGCCAACAACCCAAAAGACCAAGTTAGAGGTTCAGGCATGCAGTGGCCATTCTCAAACAAGGTCTCAGCCCTTCCTCAATTCCTTTCCTTCAAGACCACTCAAGAAGATAGGCCTAGAAAGACTATTCTTGATCCACTAGCTTCATCAGGATACATGAACATATCAACTAAAGATGCTTTTGAATCTGACCAGAATCCATTCTTGGGTGTGACCCAGAAAAATTTGTCCATAGGCAAGCAAGCAGGAAACAAACATGGAATAGCATTTTATGCTCTGCAGTGTTCTGATGCACATTCAGCTTGCCATCAGGAAGCAAGAGTATTCACAGTTTCAAACCATTCAAATCAAGTGAGTTCTGTTCTTCAATCTAATCTTCCTACTACCGGACTTAACATGGTCAATTCAGCCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAGTAGGTTCCATTGTTGGCTCTACTGGCTTAAGGAATTGTTCCAAATCTTCTGGCATACCTTCTCAGCTGACCATTTTCTATGATGGTTCAGTATGTGTTTATGATGACATATCACCTGAGAAGGCTCAGGCTATCATGTTACTGGCTGGAAAATTATCTGCTCCAATTCAGAACATGACAGTTTCCACAGCTAAGTTGCAACCAGCAATCTCTATTCCCTCCAAAGATGATGGTTTCATTAGAAACCAATCCTATCCCTCACCCCTTCCAAGCCCTCTCCCACTGATCTCTCATGCCAGTTCTCAGCCTGGGGGAGGATCTTCTAGCAACAATGAACCCACAATAATTAGACCAGGAGGACCTTCAACTACCCCTTCTAACCATTTGGAGTCTTCTATTGTTGTTGGTTCTGTAGGATCTTCAGCTTCAAAAATGGTTCAACCAGTATTCTTGCCTCAGGCACGTAAAGCATCATTGGCTCGGTTTTTGGAGAAGAGAAAGGAAAGGGTGATGAACACATCACCATACTGTATGTGCAAGAAATCACCAGAATGCAGCACTCATGGATCAGACAGTGTTAGCTTCTCCATGAACTCCTCTGGTTGCTGTCCTCTACCTGCCATTAACTAG 1143 0.4322 MEREFFGLSSKYGDAANNPKDQVRGSGMQWPFSNKVSALPQFLSFKTTQEDRPRKTILDPLASSGYMNISTKDAFESDQNPFLGVTQKNLSIGKQAGNKHGIAFYALQCSDAHSACHQEARVFTVSNHSNQVSSVLQSNLPTTGLNMVNSAIKPQPLGSKSSGTPLSVLPSVGSIVGSTGLRNCSKSSGIPSQLTIFYDGSVCVYDDISPEKAQAIMLLAGKLSAPIQNMTVSTAKLQPAISIPSKDDGFIRNQSYPSPLPSPLPLISHASSQPGGGSSSNNEPTIIRPGGPSTTPSNHLESSIVVGSVGSSASKMVQPVFLPQARKASLARFLEKRKERVMNTSPYCMCKKSPECSTHGSDSVSFSMNSSGCCPLPAIN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2293g00006 380 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 113 359 IPR040390 -
Gabi2293g00006 380 SMART tify_2 187 222 IPR010399 -
Gabi2293g00006 380 MobiDBLite consensus disorder prediction 1 27 - -
Gabi2293g00006 380 ProSiteProfiles Tify domain profile. 187 222 IPR010399 -
Gabi2293g00006 380 Pfam Jas motif 323 347 IPR018467 -
Gabi2293g00006 380 Pfam tify domain 191 221 IPR010399 -
Gabi2293g00006 380 MobiDBLite consensus disorder prediction 265 300 - -
Gabi2293g00006 380 MobiDBLite consensus disorder prediction 262 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2293g00006 Gabi-Chr2293 108272 112963 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2293g00006 28 353 Tify Gene Family AT3G17860 39.118 1.79e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Gabi2293g00006 tify 5.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2293g00006 K13464 - gmx:100807288 492.656