Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2293g00003 ATGGTAATGAAGAAGGTTCACAAGGTTTCAACTTTCTTCTTCTTCTTCACTACCATCTTCTTTGTTTGTGTTCCTCCGGCAAAACCAGATCTGGGTTCGGAGCGCGCCGCCCTGTTAACACTCCGTTCAGCGGTGGGTGGCCGAACCCTTCTCTGGAACGCCACCTTCGCCACCCCATGCAACTGGGGTGGCGTCAAATGCAACTCTAACAACACTCACGTCGTTGAGCTTCACCTTCCCGGAGTTGCACTTTCCGGTGAACTTCCCGGCGGTGTTTTCTCTAACCTTGTCCACCTCCGCACCCTCAGCCTCCGGTTCAACGCCCTCTCCGGCAACCTCCCCGCCGACCTCGCCGCCTGCGTTGGCCTCCGGAACCTGTACTTGCAGCAGAACCTTCTCTCCGGCGAGGTTCCTCAGTTTTTGTTCCGGTTGAACGGTTTGGTTCGGCTCAATTTGGGTTATAATAATTTTTCCGGTCCGGTTCCGGTCGGGTTCAGGAACTTGACCCGGTTGAGGACACTCTTTCTGGAGAACAACCGGTTAACCGGTTCGTTGCCTGAGTTGGACCTAACCGAGTTGGCTCAGTTCAATGTGTCTAACAACATGTTGAATGGTTCTGTTCCTGAAAAGTTGCAAGCTTTTTCAAAGGACTCGTTTTTGGGTAATTCCCTTTGTGGGAAGCCACTAAGTCTTTGTCCTGGGGATGCTAATGTTGGGAATGGTGCAAATGGGACTTCAAGTGTGGTTGGAGATAATGGAGGGAAGGTGGTTGGAAAGAAGAAGAAGAGCAAGTTGTCTGGTGGTGCCATTGCTGGGATTGTTATTGGGTGTGTGGTGGTTCTTTTGTTGGTTGTTTTTGCTTTGATTCTTTTGTGTAGGAAGAATAGTAGTAAGAAGACTAGTTCTGTTGAAAATTTTGCAACTTTGAAGCATCGTGAGGTGGAAATTCAAGGTGACAAGGCTGTTTCTGATGTGGAGAATGGTTCGGCGGCCGCGGCGGTGGCCCGGACTAGGAATGGTGGTAAGAGTGAAGGGGTTGGTGGTGGAGACAAAAAATTGGTGTTTTTTGGTAATTCAAGTAAGGTGTTTGATCTTGAGGATTTGCTTAGGGCTTCTGCAGAGGTTTTGGGGAAAGGGACTTTTGGGACTGCATATAAGGCGGTTTTGGAGGTTGGTCCTGTGGTGGCTGTGAAGAGGTTGAGGGATGTGACCATTTCTGAGAGGGAATTCAAGGAGAAGATTGAAGGGGTTGGAACAATGGATCATGAAAATTTGGTCCCTCTTAGGGCTTACTATTATAGCAGGGATGAGAAGCTTCTTGTTCATGATTACTTTCCAATGGGAAGCTTATCTGCACTTTTGCATGGAAACAAAGGAGCGGGTAGGACACCACTGAATTGGGAATTGAGATCAGGCATTGCACTTGGAGCTGCTCGTGGCATTGAATACCTACATTCACAAGGGCCTAATGTTTCTCATGGAAACATAAAGTCATCAAACATCCTCCTAACCAAGTCCTATGATGCAAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCTTCATCCACACCCAACAGGGTTGCCGGCTACCGTGCTCCGGAGGTAACTGATCCTCGGAAAGTATCTCAGAAAGCTGATATATACAGCTTTGGTGTATTGCTCTTGGAACTTCTTACCGGAAAGGCTCCTACTCATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTGCAATCAATTGTTAGAGAAGAATGGACTTCTGAGGTCTTCGATTTTGAGCTCCTTAGGCATCAGAATGTTGAAGAAGAAATGGTTCAGTTGTTGCAACTTGCAGTAGATTGTGCAGCACCATACCCTGATAAGCGCCCTTCAGTTTCTGAAGTGAGACAGCACATAGAAGAGTTACGTAGGTCAAGTTTGAAAGAGGATCAAGGCCAAATCCAACAACATGATTTGATCAATGATATAGATGATATATCTTCTAGATGA 2001 0.4738 MVMKKVHKVSTFFFFFTTIFFVCVPPAKPDLGSERAALLTLRSAVGGRTLLWNATFATPCNWGGVKCNSNNTHVVELHLPGVALSGELPGGVFSNLVHLRTLSLRFNALSGNLPADLAACVGLRNLYLQQNLLSGEVPQFLFRLNGLVRLNLGYNNFSGPVPVGFRNLTRLRTLFLENNRLTGSLPELDLTELAQFNVSNNMLNGSVPEKLQAFSKDSFLGNSLCGKPLSLCPGDANVGNGANGTSSVVGDNGGKVVGKKKKSKLSGGAIAGIVIGCVVVLLLVVFALILLCRKNSSKKTSSVENFATLKHREVEIQGDKAVSDVENGSAAAAVARTRNGGKSEGVGGGDKKLVFFGNSSKVFDLEDLLRASAEVLGKGTFGTAYKAVLEVGPVVAVKRLRDVTISEREFKEKIEGVGTMDHENLVPLRAYYYSRDEKLLVHDYFPMGSLSALLHGNKGAGRTPLNWELRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADIYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSIVREEWTSEVFDFELLRHQNVEEEMVQLLQLAVDCAAPYPDKRPSVSEVRQHIEELRRSSLKEDQGQIQQHDLINDIDDISSR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2293g00003 666 Gene3D Ribonuclease Inhibitor 31 188 IPR032675 -
Gabi2293g00003 666 Gene3D Transferase(Phosphotransferase) domain 1 446 664 - -
Gabi2293g00003 666 FunFam Probable inactive receptor kinase At1g48480 445 647 - -
Gabi2293g00003 666 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Gabi2293g00003 666 SUPERFAMILY Protein kinase-like (PK-like) 374 637 IPR011009 -
Gabi2293g00003 666 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Gabi2293g00003 666 PANTHER OS05G0588300 PROTEIN 13 643 - -
Gabi2293g00003 666 SUPERFAMILY L domain-like 52 213 - -
Gabi2293g00003 666 Pfam Protein kinase domain 373 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2293g00003 666 ProSiteProfiles Protein kinase domain profile. 370 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2293g00003 666 Pfam Leucine rich repeat N-terminal domain 33 68 IPR013210 -
Gabi2293g00003 666 MobiDBLite consensus disorder prediction 641 666 - -
Gabi2293g00003 666 Pfam Leucine rich repeat 138 181 IPR001611 GO:0005515
Gabi2293g00003 666 Gene3D Phosphorylase Kinase; domain 1 348 444 - -
Gabi2293g00003 666 FunFam pollen receptor-like kinase 1 339 444 - -
Gabi2293g00003 666 Gene3D Ribonuclease Inhibitor 189 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2293g00003 Gabi-Chr2293 44420 47246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2293g00003 30 640 Receptor kinase-like Gene Family AT1G48480 64.895 0.0 783
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2293g00003 Pkinase 1.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2293g00003 - - gmx:100818955 884.789