Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2293g00002 ATGCCATTGATTCACACACCACCAACCTGCTATGCTAACCTCGACCCACTCACCAATTATTCCTTTCCCTCCAATGCATCATCTTCCACTGTTACTTTTGCTACCTTTGGATTCAGTGTCACTGGCACCAGGTTTATGCACAAAATGGGTCATACCCACAACCCAAGTTTTGTTCCTTCCACTGCCAGGAATCGGTCGCGTGCTTCAGTAATCAGAGCTAAAGCGGGAACCGATTACTATTCCACCTTGAATGTTAGCAGCAATGCTACGCTGCAAGAAATCAAGAGCTCCTATCGGAAACTAGCTCGCAAGTACCATCCAGATATGAACAAAAGCCCTGGGGCAGAGGAGAAGTTCAAGGAGATAAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATATGATCGCTTTGGTGAGTCAGGTCTACAAGGAGAAAACGGAGTGTCAGCCAGTGCTTCAGGGGTTGATCCTTTTGACTTATTCGATGCATTCTTTGGTCGTTCGGATGGACTATTTGGAGATAGTGATGGAGGGGGCATCAACTTCGATTTGAGAAATAATAGAAACCATGTTCATGATGTTCGGTATGACCTTCATTTGAGCTTTGAAGAATCAATTTTTGGAGGAAAGAGGGAGATTGAAGTTTCTTGTTTTCAGACCTGTAATGGTTGTGAGGGTACAGGCGCTAAATCAAAGAATTGCATTAAACAATGCGCAAATTGTGGTGGCAGAGGAGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAGTGATGTCTCAAGTTTCTACCTGCTCTAAGTGTGGTGGTCTTGGCAAGACAATCACTGATCACTGTCGAATGTGTGATGGCAGTGGTAAGGTGGAATCGAAACGAACAATGAAAGTGGTCATTCCTCCTGGCATCAGTGATGGAGACACAATGCAAATTCGAGGAGAAGGGAATTTTGATGAGAAGAGGCATATTACTGGGGATCTTTTTGTTGTTCTCCATGTAGATAAAAAACAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATACTGGGGTCTGTTAAAAAGGTAGAAACTGTTGAAGGTTTAAGGGATCTCCAAATTCCTTCCGGGATTCAGCCTGGAGATTCAGTGAAGTTGTCACGTTTGGGAGTTCCAGACATGAATAAACCATCTACTCGAGGGGATCATTACTTCATTGTGAATGTTCTCATTCCTAAAAATATCAGTGGCACCGAACGTGTACTTGTTGAGCAGTTAGCTTCGCTAAGAGCATCTAGCAAAGGCAATTCAGTGTCTTCTAATGACATTGGGAGACGTAAAGGAAAATTTAATGAATTCATAAAGAGGCATCCAAAAGATGAAGCTTCAAGCAAGGGAATAAAAAATGTTGGTTCTCTATGGAGATCAATCAAGAACTTCTTAAGGGGAGGACATTCTGAAGAAAGGTTTGCTTCAATTAGCCTGGATACATCAGTGTCATTGTGGAGATTTGGCCACGAAAATCATTCAGTCTCAAATTCCTTTTTTGTTGTTTTCATTATAACTTGGATTTTTGCGTCTATAGCAAAATCTGAGTACTCGTTATTTCAGAAAAGAACCCAGTCCTTCATAAATAGAACACACGGTGAAAAAAATTAA 1671 0.4147 MPLIHTPPTCYANLDPLTNYSFPSNASSSTVTFATFGFSVTGTRFMHKMGHTHNPSFVPSTARNRSRASVIRAKAGTDYYSTLNVSSNATLQEIKSSYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQGENGVSASASGVDPFDLFDAFFGRSDGLFGDSDGGGINFDLRNNRNHVHDVRYDLHLSFEESIFGGKREIEVSCFQTCNGCEGTGAKSKNCIKQCANCGGRGGEMKSQRTPFGVMSQVSTCSKCGGLGKTITDHCRMCDGSGKVESKRTMKVVIPPGISDGDTMQIRGEGNFDEKRHITGDLFVVLHVDKKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLQIPSGIQPGDSVKLSRLGVPDMNKPSTRGDHYFIVNVLIPKNISGTERVLVEQLASLRASSKGNSVSSNDIGRRKGKFNEFIKRHPKDEASSKGIKNVGSLWRSIKNFLRGGHSEERFASISLDTSVSLWRFGHENHSVSNSFFVVFIITWIFASIAKSEYSLFQKRTQSFINRTHGEKN 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2293g00002 556 Gene3D - 196 331 - -
Gabi2293g00002 556 Gene3D DnaJ domain 75 178 IPR036869 -
Gabi2293g00002 556 Pfam DnaJ domain 78 139 IPR001623 -
Gabi2293g00002 556 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 212 292 IPR036410 -
Gabi2293g00002 556 Gene3D - 225 289 - -
Gabi2293g00002 556 FunFam Molecular chaperone DnaJ 217 294 - -
Gabi2293g00002 556 SMART dnaj_3 77 134 IPR001623 -
Gabi2293g00002 556 SUPERFAMILY Chaperone J-domain 75 182 IPR036869 -
Gabi2293g00002 556 PRINTS DnaJ domain signature 98 113 IPR001623 -
Gabi2293g00002 556 PRINTS DnaJ domain signature 134 153 IPR001623 -
Gabi2293g00002 556 PRINTS DnaJ domain signature 114 134 IPR001623 -
Gabi2293g00002 556 PRINTS DnaJ domain signature 80 98 IPR001623 -
Gabi2293g00002 556 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 57 438 - -
Gabi2293g00002 556 FunFam Chaperone protein dnaJ A6 chloroplastic 75 181 - -
Gabi2293g00002 556 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Gabi2293g00002 556 SUPERFAMILY HSP40/DnaJ peptide-binding domain 343 424 IPR008971 GO:0006457|GO:0051082
Gabi2293g00002 556 CDD DnaJ_C 197 419 - -
Gabi2293g00002 556 Pfam DnaJ central domain 225 289 IPR001305 GO:0031072|GO:0051082
Gabi2293g00002 556 Hamap Chaperone protein DnaJ [dnaJ]. 75 474 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi2293g00002 556 CDD DnaJ_zf 225 289 IPR001305 GO:0031072|GO:0051082
Gabi2293g00002 556 SUPERFAMILY HSP40/DnaJ peptide-binding domain 197 335 IPR008971 GO:0006457|GO:0051082
Gabi2293g00002 556 ProSiteProfiles Zinc finger CR-type profile. 212 294 IPR001305 GO:0031072|GO:0051082
Gabi2293g00002 556 FunFam Molecular chaperone Hsp40/DnaJ family protein 341 433 - -
Gabi2293g00002 556 Pfam DnaJ C terminal domain 198 416 IPR002939 -
Gabi2293g00002 556 CDD DnaJ 78 131 IPR001623 -
Gabi2293g00002 556 ProSiteProfiles dnaJ domain profile. 78 142 IPR001623 -
Gabi2293g00002 556 Gene3D - 341 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2293g00002 Gabi-Chr2293 25464 32858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2293g00002 79 139 C2H2 Transcription Factor Family AT1G74250 43.284 1.09e-07 52.8