LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2285g00003	ATGATTGGCAGGTCTTTTACAGGTAAAAGAAGATTGAAGGATTTATTGATTCAAAAAGATAATCGCTTTTGTGCTGATTGTGGTGCTTCAGATCCTAAATGGGCGTCTGCTAACATTGGAGTTTTTGTATGCTTAAAATGTTGTGGTGTGCACAGAAGTCTTGGTACTCATATATCAAAGATTTTGTCCGTGACTTTGGATGAATGGTCAGGTGATGAAATAGACTCAATGATTGAAGTTGGAGGAAATTCTTCCGCTAATTCAATTTATGAGGCTTATATTCCGGAAGGATATACAAAACCTGGGCCAGATGCCAGTCACGAGCACCGTGCAAAATTCATCCGGTCAAAGTATGAACGTCAAGAATTTTTAAAACCTAGTTTGCGCATTGTGTCAGGAAAAAGCACTCTTCAATCAAGTTTTTCGAAAAGGATTATGGATAGTTTTCGAAGTACTAGTAGTTCACATATGGTAATTATATTTTACATTTTAGTTCCTTTGATTGAAGGAATGGTAGAATTTATTGGAATGTTGAAGGTGAAAGTAATTAAAGGCACAGATTTAGCTATCAGAGATATGAGGTCCAGTGATCCGTATGTCATCTTGAAACTTGGAAAACAGACTGTACAGACCAGTGTAATAAAAAGTAATTTGAATCCAGTCTGGAATGAGGAGCTTATGCTGTCTGTTCCTCAGCAATTTGGAGCATTGAATTTGAAGGTATTTGATCACGACTTGTTTTCAGCTGATGATATAATGGGAGAAGCAGAGCTTGATCTTCAGCCACTGATTACATCTGCAATGGCATTTGGAGATGCTGGAATGTTTGACGATATGCAAATAGGAAAATGGCTGAAATCCCATGACAATGCACTTATAGATGATAGCACAGTCAATATCATTGATGGTAAGGTTAAACAAGAGATGTCAATCAAGCTACAGAACGTTGAATCTGGAGTATTAGACTTAGAACTCGAGTGGATACCTCTTGATCATTAG	999	0.3734	MIGRSFTGKRRLKDLLIQKDNRFCADCGASDPKWASANIGVFVCLKCCGVHRSLGTHISKILSVTLDEWSGDEIDSMIEVGGNSSANSIYEAYIPEGYTKPGPDASHEHRAKFIRSKYERQEFLKPSLRIVSGKSTLQSSFSKRIMDSFRSTSSSHMVIIFYILVPLIEGMVEFIGMLKVKVIKGTDLAIRDMRSSDPYVILKLGKQTVQTSVIKSNLNPVWNEELMLSVPQQFGALNLKVFDHDLFSADDIMGEAELDLQPLITSAMAFGDAGMFDDMQIGKWLKSHDNALIDDSTVNIIDGKVKQEMSIKLQNVESGVLDLELEWIPLDH	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2285g00003	332	CDD	ArfGap	12	118	-	-
	Gabi2285g00003	332	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	9	331	IPR044518	GO:0005096\|GO:0005543
	Gabi2285g00003	332	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	126	IPR037278	-
	Gabi2285g00003	332	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	176	317	IPR035892	-
	Gabi2285g00003	332	Gene3D	C2 domain	174	331	IPR035892	-
	Gabi2285g00003	332	Pfam	Putative GTPase activating protein for Arf	10	125	IPR001164	GO:0005096
	Gabi2285g00003	332	FunFam	Arf-GAP with dual PH domain-containing protein 1	4	132	-	-
	Gabi2285g00003	332	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	9	123	IPR001164	GO:0005096
	Gabi2285g00003	332	CDD	C2_ArfGAP	175	319	-	-
	Gabi2285g00003	332	PRINTS	HIV Rev interacting protein signature	21	40	IPR001164	GO:0005096
	Gabi2285g00003	332	PRINTS	HIV Rev interacting protein signature	40	57	IPR001164	GO:0005096
	Gabi2285g00003	332	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Gabi2285g00003	332	SMART	C2_3c	177	272	IPR000008	-
	Gabi2285g00003	332	SMART	arf_gap_3	10	131	IPR001164	GO:0005096
	Gabi2285g00003	332	Pfam	C2 domain	177	266	IPR000008	-
	Gabi2285g00003	332	ProSiteProfiles	C2 domain profile.	159	273	IPR000008	-
	Gabi2285g00003	332	Gene3D	Arf GTPase activating protein	4	129	IPR038508	-
	Gabi2285g00003	332	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	174	332	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2285g00003	Gabi-Chr2285	21743	31238	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2285g00003	2	332	C2H2 Transcription Factor Family	AT4G21160	71.893	0.0	514

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2285g00003	K12486		-	gmx:100777084	541.962