Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2284g00017 ATGTCCCGTGTGTATGTTGGTAACCTGGATTCAAGAGTGACCGAGAGAGACCTTGAAGATGAGTTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGGAGACCACCTGGTTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATTCGCGAATTAGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCACACAACTCTAGAGGTGGAGGTGGAGGCGGAGGTGGTGGTCGTGGAGGTGGTGGTCGTGGTCGCTCTAGCGGCGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCATGCGTGGTGGTTCAGGAAGACGTCGTAGCCGTAGTCCACCTCGATTTCGTAGGAGCCCAAGTTATGGGAGAAGGAGTTACAGTCCTCGTGGGCGTTCTCCCAGGCGCCGCAGTGTGTCCCCTCGTGGACGCAGCTATAGCAGGTCACCTCCTTATCGTGGGCGTGAGGAGGTACCATATGCTAATGGCCAGAAAGGAATGACAAATAAACGTGATGACTGA 561 0.5205 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGGGRGGGGRGRSSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPYRGREEVPYANGQKGMTNKRDD 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2284g00017 186 SMART rrm1_1 3 69 IPR000504 GO:0003723
Gabi2284g00017 186 MobiDBLite consensus disorder prediction 66 186 - -
Gabi2284g00017 186 CDD RRM_SRSF3_like 3 71 - -
Gabi2284g00017 186 Gene3D - 98 153 - -
Gabi2284g00017 186 MobiDBLite consensus disorder prediction 103 118 - -
Gabi2284g00017 186 FunFam Serine/arginine-rich splicing factor RSZ22A 95 155 - -
Gabi2284g00017 186 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Gabi2284g00017 186 SMART c2hcfinal6 98 114 IPR001878 GO:0003676|GO:0008270
Gabi2284g00017 186 SUPERFAMILY Retrovirus zinc finger-like domains 90 115 IPR036875 GO:0003676|GO:0008270
Gabi2284g00017 186 FunFam serine/arginine-rich splicing factor RSZ22-like 1 97 - -
Gabi2284g00017 186 Pfam Zinc knuckle 98 113 IPR001878 GO:0003676|GO:0008270
Gabi2284g00017 186 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 167 - -
Gabi2284g00017 186 Gene3D - 1 97 IPR012677 -
Gabi2284g00017 186 ProSiteProfiles Zinc finger CCHC-type profile. 98 113 IPR001878 GO:0003676|GO:0008270
Gabi2284g00017 186 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Gabi2284g00017 186 SUPERFAMILY RNA-binding domain, RBD 3 93 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2284g00017 Gabi-Chr2284 177710 181896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2284g00017 2 59 Eukaryotic Initiation Factors Gene Family AT4G34110 38.095 4.49e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2284g00017 K12896 - gmx:100796961 221.09