Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2282g00018 CTCTACGCCGCCGCCGCCGCCGCACCATCGGAGAGCCAGTCCCTCCTCAGGCTCAAACAATCCTTCACAAACGCTGACCGAGCCTTAGCTTCGTGGATCCCGAACGTGTCCCCTTGCTCAGGAACTTGGGTCGGCGTCGTTTGCTTCAACAACATCATCACCGGTTTGCACCTCTCCGACTTAGGACTCTCCGGCAAGATCGACGTCGAAGCTCTCGCCGAGATTCGTGGCCTCCGAACCCTCAGCTTCGTCAACAACTCATTCTCAGGACCCATTCCAGAATTCAACAAACTTGGCACAATCAAATCGCTCTTGTTAACACAAAACCAATTCTCTGGTCCCATTCCTTCAGATTTCTTCTCCCATTTAGGTTCCTTAAAGAAAGTGTGGCTCTCAGGTAACACCTTCTCAGGTAACATACCCGTTTCGTTAACACAACTCGACCTTCTCAAAGAGCTTCACCTCGAATATAACCAATTCTCAGGGCCTATACCAAACCTCAAACAAGACATAAGATCCTTCGATGTTTCAAACAACAAGTTAGAAGGTCCAATCCCTGAAAGCTTGTCCAAGTATGGTGCTGTTTCTTTCTCTGGGAATGAAGGGCTTTGTGGGAAGCCTCTTGAGAAGCCTTGTGATGGTTCTTCTTCTTCTTCTTCTTATTATACGCTTCCTAACAGTACTGATAATGACAGTGGTTACGGTTCGGGTTGGGCTGTGAAGGTGATTGTGATTCTCGTTCTTGCTGCTGTTGCTGCGGTTATTTTCTTGTTTGTTAAGTCGAGGCAGCGTAGGAATAATTTCAGCATTATTAGCAGGTCGAGTAGTGTGGATGAGGTTGTGCAGGTGCATGTGCCTAGTATTAAACAACATTCATCGGAACCTATCAGCAGAAAGGGTGGTGGAGAATCGAGAAAAGGGCACTCGCATTCGAAGAGTGGTGGAATGGGGGATATTGTGATGGTCAATGATGAAAAGGGTGTGTTTGGTTTGCAGGATTTGATGAAGGCTGCTGCTGAGGTTCTGGGAAATGGTGGGTTGGGTTCTGCTTATAAAGCTGCCATGGCTAATGGGTTGTCTGTGGTGGTGAAGAGGATGAGGGAGATGAATAAAATTGGAAGAGATGTGTTTGATGCTGAGATGAGACAGTTTGGGAGGATCAGACACCGCAATATTTTGAGTCCTTTGGCTTACCATTACCGCAAGGAGGAGAAGCTTTTTGTTACAGAGTACATGCCCAAAGGAAGCTTGTTATACGTCTTGCATGGTGATAGAGGAATATGCCATGCTGATCTGAATTGGCCTACCCGTTTGAAGATTGTTAAGGGAATTGCAAGAGGGTTGGGATTCCTTTACACTGAATTTTCAACCTACGATCTGCCCCATGGAAACCTCAAATCTAGCAATGTTTTACTAAGTGATGATTACGAGCCTCTCTTAAGTGACTTTGCCTTTCATCCACTGATCAACCCCAATGTTGCCGTGCAGGCAATGTTTGCCTATAAATCCCCAGATTATTTACAGTGGCAGAAAGTTTCACAGAAGACTGATGTTTTTTGCTTTGGAATCATCATTCTTGAAATCATTACTGGGAAATTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGGACTGATGTTGTGCAATGGGTCCTCACAGCAATTTCTGAGAGAAGAGAAGCAGAATTGATTGATCCTGAGTTAGAAAATAACAACTCATTCAATCAGATGCTGGAACTTCTCCAAATTGGGGCTGCTTGCACAGAAAGCAACCCTGATCAAAGACTAAACATGAAGGAAGCCATTAGAAGGATAGAGGAGTTACAGGTTTAA 1833 0.4539 LYAAAAAAPSESQSLLRLKQSFTNADRALASWIPNVSPCSGTWVGVVCFNNIITGLHLSDLGLSGKIDVEALAEIRGLRTLSFVNNSFSGPIPEFNKLGTIKSLLLTQNQFSGPIPSDFFSHLGSLKKVWLSGNTFSGNIPVSLTQLDLLKELHLEYNQFSGPIPNLKQDIRSFDVSNNKLEGPIPESLSKYGAVSFSGNEGLCGKPLEKPCDGSSSSSSYYTLPNSTDNDSGYGSGWAVKVIVILVLAAVAAVIFLFVKSRQRRNNFSIISRSSSVDEVVQVHVPSIKQHSSEPISRKGGGESRKGHSHSKSGGMGDIVMVNDEKGVFGLQDLMKAAAEVLGNGGLGSAYKAAMANGLSVVVKRMREMNKIGRDVFDAEMRQFGRIRHRNILSPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDRGICHADLNWPTRLKIVKGIARGLGFLYTEFSTYDLPHGNLKSSNVLLSDDYEPLLSDFAFHPLINPNVAVQAMFAYKSPDYLQWQKVSQKTDVFCFGIIILEIITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELENNNSFNQMLELLQIGAACTESNPDQRLNMKEAIRRIEELQV 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2282g00018 610 CDD STKc_IRAK 342 608 - -
Gabi2282g00018 610 Gene3D Ribonuclease Inhibitor 172 212 IPR032675 -
Gabi2282g00018 610 Gene3D Phosphorylase Kinase; domain 1 305 411 - -
Gabi2282g00018 610 Gene3D Transferase(Phosphotransferase) domain 1 412 610 - -
Gabi2282g00018 610 ProSiteProfiles Protein kinase domain profile. 336 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2282g00018 610 MobiDBLite consensus disorder prediction 288 316 - -
Gabi2282g00018 610 SUPERFAMILY L domain-like 10 197 - -
Gabi2282g00018 610 MobiDBLite consensus disorder prediction 296 312 - -
Gabi2282g00018 610 Gene3D Ribonuclease Inhibitor 8 168 IPR032675 -
Gabi2282g00018 610 SUPERFAMILY Protein kinase-like (PK-like) 340 605 IPR011009 -
Gabi2282g00018 610 Pfam Protein kinase domain 340 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2282g00018 610 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 609 IPR046959 -
Gabi2282g00018 610 Pfam Leucine rich repeat N-terminal domain 9 48 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2282g00018 Gabi-Chr2282 245395 248293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2282g00018 10 610 Receptor kinase-like Gene Family AT3G42880 52.751 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2282g00018 Pkinase 6.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2282g00018 - - gmx:100790660 837.41