Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2282g00011 ATGGCTTCTGATTCAAACGAACATGCAACGAGCAACACGCTTCAGTCCATATGCTACAAGCGCGGTTCCCTTCAGCTTCTTGATCAGAGAAAGCTACCACTAGATACAATTTACTTGGATATTCGGGATTCAACAGATGGCTGGAATGCCATACGGGATATGGTGGTCCGGGGTGCACCTGCTATTGCTATTGCAGCAGCACTCTCTTTGGCTGTGGAGTTGTTCAATTTAGATTGTTTTAATGGGTCACCTGGTGATGCTGCTTCCTTCCTGCAGAAGAAATTAGAATATCTTGTCTCGAGTCGGCCGACTGCAGTAAACCTATCAGATGCTGCTACAAAACTTAAAGAAGTCATATCTAAGGCCGCTGCTACCACTTCAGAGGCCAGGAGTGTTTTTCAGGCATATGTAGAAGCTGCTGAAATTATGCTTGAGGATGATGTTGCCTCGAATAGAGCAATTGGTTCTAATGGAGCTAGTTTTATTCAACATCAAACAGAGAAAAAGAAGCTTTCTGTTTTGACCCATTGCAACACTGGAAGTCTTGCCACAGCTGGATATGGTACTGCTCTGGGTGTAATCCGTTCACTTCACAGTGGAGGAGTTTTAGAAAGTGCTTATTGCACAGAAACACGTCCATTCAATCAAGGATCTAGACTTACTGCCTTTGAGTTGGTGCATGAAAAAATACCAGCAACCCTTATAGCGGATTCTGCTGCAGCTGCATTAATGAAAGCAGGACGTGTGGATGCTGTTGTTGTTGGGGCAGATCGTGTTGCGTCAAATGGTGACACAGCCAACAAAATTGGAACTTATAGTGTTGCCTTATGTGCCAAGTTTCATAACGTACCTTTTTATGTGGCTGCACCCCTGACATCCGTTGATCTATCACTTTCTTCTGGACAAGAAATTGTCATTGAGGAGAGATCTCCCAAGGAATTGTTGAACTCACGTGGAGGACTTGGAGAGCAGGTTGCTGCCTCAGGAATTGCTGTCTGGAACCCGGCTTTTGATGTTACACCTGCTAATCTAATATCTGGGATCATCACTGAGAAGGGTGTCATTACGAAGACATCTACTAGTGATGCTTTTGACATAAAAGCTTTCGTGCAGAAAACTAGTTAA 1125 0.4409 MASDSNEHATSNTLQSICYKRGSLQLLDQRKLPLDTIYLDIRDSTDGWNAIRDMVVRGAPAIAIAAALSLAVELFNLDCFNGSPGDAASFLQKKLEYLVSSRPTAVNLSDAATKLKEVISKAAATTSEARSVFQAYVEAAEIMLEDDVASNRAIGSNGASFIQHQTEKKKLSVLTHCNTGSLATAGYGTALGVIRSLHSGGVLESAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKAGRVDAVVVGADRVASNGDTANKIGTYSVALCAKFHNVPFYVAAPLTSVDLSLSSGQEIVIEERSPKELLNSRGGLGEQVAASGIAVWNPAFDVTPANLISGIITEKGVITKTSTSDAFDIKAFVQKTS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2282g00011 374 PANTHER METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE 11 372 - -
Gabi2282g00011 374 Pfam Initiation factor 2 subunit family 56 356 IPR000649 GO:0044237
Gabi2282g00011 374 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 42 357 IPR011559 GO:0044249
Gabi2282g00011 374 Gene3D - 204 369 IPR042529 -
Gabi2282g00011 374 NCBIfam S-methyl-5-thioribose-1-phosphate isomerase 15 357 IPR005251 -
Gabi2282g00011 374 FunFam Methylthioribose-1-phosphate isomerase 12 203 - -
Gabi2282g00011 374 Gene3D - 12 203 IPR027363 -
Gabi2282g00011 374 FunFam Methylthioribose-1-phosphate isomerase 169 367 - -
Gabi2282g00011 374 SUPERFAMILY NagB/RpiA/CoA transferase-like 11 362 IPR037171 -
Gabi2282g00011 374 Hamap Putative methylthioribose-1-phosphate isomerase [mtnA]. 14 366 IPR005251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2282g00011 Gabi-Chr2282 91142 94622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2282g00011 53 374 Eukaryotic Initiation Factors Gene Family AT2G05830 76.780 1.52e-172 482