Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2282g00008 ATGCAAAATCCATTAATACTGAAATCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAAATCTATTGGATGATGCTTATGCTGATTTATGTAATACACTCAAATCTAAGGGAGATGTCTGTGCAATAATTTATTGCCTTGAACGTTCAATGTGTGATGACTTGTCGGCTAATCTATCCCAAAGTGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCTGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCTTCAACAAGTCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATATTAAGCAACTCAGGGAGCAAGAAGTTACAGTCATCAAATTCACAAGAAGAATCATCCAGAGTGTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGCGAAGGATCTGGATGTCGTAGAAAAAGAATTCTCGAGAGTTTTGGAGAACAGGTAACTGCGTCACTATGTGGAAAAACATGTGATTCCTGCAGACATCCAAACTTAGTTGCCAGATATTTGGAGGATCTCACAACTGCCTGTGCTCTACGGCAGAAAAATGGTTCTTCTCGAGTTTTTATCACCAGTTCCACTGATGCAATCAACGAAAAACAGTTATCTGAATTCTGGAATCGGGATGAGGAAGGAAGTGGATCAGAGGAGGATATTTCTGACTCAGATGATGAGTTGTCATTGGCAGATGGTAATGAGATTGTCAACAACCTAACCAGGTCAAAGCGTCATTCCAGATTGGGAGTAAATGAAAAGCTTTCTTTGTTACAACGGGCAGAAGAAAACTTCTATCGAAACAAGAACACTGATAAACAGAGCATCAAAGTTGACAAGAATGCTATTTCCGATACGATGCGAGGAGCAAGCAGGCAAAGACTGCAGAATGCTCTAAATCAGGCTCAGCAACGGCTTGACGACTTCAAGATTGAAATGGAAACATCAGCATCTTTCCTCGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAGTCTTTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTGACGACTACAAGTTCTACCAATCTGATGAACCGACTTTGTGAAATTAATGCTTCCACATCAATGAATGTCTTGTCTGAAACTGAACATGCCCTCACACCACCACCTGCTTTAGATCCTTGTGCAAAAGAAGATACTGGCAATGAACTCTCGGGCAATGCTAGATCAGAAACTTCCCCAGGTGTGCCAATGGAAAGTTCTTTGAATGCGAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAACAGTAGGAAAGCAAAGGGGGACCAATCAAATGACTCAAAAAAACATTCATCAAGAGTAGAAAAGAAGATGAGGGTACAATAA 1542 0.3995 MQNPLILKSSFNRPNIYYEVRYKNLLDDAYADLCNTLKSKGDVCAIIYCLERSMCDDLSANLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGSKKLQSSNSQEESSRVSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDSCRHPNLVARYLEDLTTACALRQKNGSSRVFITSSTDAINEKQLSEFWNRDEEGSGSEEDISDSDDELSLADGNEIVNNLTRSKRHSRLGVNEKLSLLQRAEENFYRNKNTDKQSIKVDKNAISDTMRGASRQRLQNALNQAQQRLDDFKIEMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSSTNLMNRLCEINASTSMNVLSETEHALTPPPALDPCAKEDTGNELSGNARSETSPGVPMESSLNAKLPQIPSFSEFVNSRKAKGDQSNDSKKHSSRVEKKMRVQ 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2282g00008 513 MobiDBLite consensus disorder prediction 453 490 - -
Gabi2282g00008 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 25 177 IPR001650 -
Gabi2282g00008 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 239 IPR027417 -
Gabi2282g00008 513 MobiDBLite consensus disorder prediction 432 513 - -
Gabi2282g00008 513 Pfam Helicase conserved C-terminal domain 30 135 IPR001650 -
Gabi2282g00008 513 MobiDBLite consensus disorder prediction 262 286 - -
Gabi2282g00008 513 SMART helicmild6 56 137 IPR001650 -
Gabi2282g00008 513 Coils Coil 350 370 - -
Gabi2282g00008 513 PANTHER DNA HELICASE RECQ FAMILY MEMBER 3 394 - -
Gabi2282g00008 513 Gene3D - 12 239 IPR027417 -
Gabi2282g00008 513 MobiDBLite consensus disorder prediction 491 513 - -
Gabi2282g00008 513 CDD SF2_C_RecQ 13 146 - -
Gabi2282g00008 513 Pfam RecQ zinc-binding 150 221 IPR032284 -
Gabi2282g00008 513 FunFam RecQ family DNA helicase 13 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2282g00008 Gabi-Chr2282 62785 88187 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2282g00008 28 152 Eukaryotic Initiation Factors Gene Family AT3G19760 24.800 3.58e-08 53.9