Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2282g00006 ATGGCACTAAAGAAGAAAGGAATTACTGCGGAATTTCTCTCCTCAACGAAAACGGCAGAAGCAAAAAATAAGATTCATGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCTGGGTTTATGTCAAAGCTGTCAAAGATTTATGCTAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCGCATTGCATCTCAACTTGGGGCCATGATTTCAGACCTAGCTATCGTAAGCTTTCATCTTTAAGAAGCCGCCTACCAGATGTACCAGTATTAGCTCTGACCGCCACTGCTGTTCCTAAGGTTCAGAAGGATGTCGTAGATTCCTTGCAGATGCAAAATCCATTAATACTGAAATCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAAATCTATTGGATGATGCTTATGCTGATTTATGTAATACACTCAAATCTAAGGGAGATGTCTGTGCAATAATTTATTGCCTTGAACGTTCAATGTGTGATGACTTGTCGGCTAATCTATCCCAAAGTGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCTGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCTTCAACAAGTCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATATTAAGCAACTCAGGGAGCAAGAAGTTACAGTCATCAAATTCACAAGAAGAATCATCCAGAGTGTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGCGAAGGATCTGGATGTCGTAGAAAAAGAATTCTCGAGAGTTTTGGAGAACAGGTAACTGCGTCACTATGTGGAAAAACATGTGATTCCTGCAGACATCCAAACTTAGTTGCCAGATATTTGGAGGATCTCACAACTGCCTGTGCTCTACGGCAGAAAAATGGTTCTTCTCGAGTTTTTATCACCAGTTCCACTGATGCAATCAACGAAAAACAGTTATCTGAATTCTGGAATCGGGATGAGGAAGGAAGTGGATCAGAGGAGGATATTTCTGACTCAGATGATGAGTTGTCATTGGCAGATGGTAATGAGATTGTCAACAACCTAACCAGGTCAAAGCGTCATTCCAGATTGGGAGTAAATGAAAAGCTTTCTTTGTTACAACGGGCAGAAGAAAACTTCTATCGAAACAAGAACACTGATAAACAGAGCATCAAAGTTGACAAGAATGCTATTTCCGATACGATGCGAGGAGCAAGCAGGCAAAGACTGCAGAATGCTCTAAATCAGGCTCAGCAACGGCTTGACGACTTCAAGATTGAAATGGAAACATCAGCATCTTTCCTCGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAGTCTTTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTGACGACTACAAGTTCTACCAATCTGATGAACCGACTTTGTGAAATTAATGCTTCCACATCAATGAATGTCTTGTCTGAAACTGAACATGCCCTCACACCACCACCTGCTTTAGATCCTTGTGCAAAAGAAGATACTGGCAATGAACTCTCGGGCAATGCTAGATCAGAAACTTCCCCAGGTGTGCCAATGGAAAGTTCTTTGAATGCGAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAACAGTAGGAAAGCAAAGGGGGACCAATCAAATGACTCAAAAAAACATTCATCAAGAGTAGAAAAGAAGATGAGGGTACAATAA 1905 0.4073 MALKKKGITAEFLSSTKTAEAKNKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLSKIYARGLLSLIAIDEAHCISTWGHDFRPSYRKLSSLRSRLPDVPVLALTATAVPKVQKDVVDSLQMQNPLILKSSFNRPNIYYEVRYKNLLDDAYADLCNTLKSKGDVCAIIYCLERSMCDDLSANLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGSKKLQSSNSQEESSRVSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDSCRHPNLVARYLEDLTTACALRQKNGSSRVFITSSTDAINEKQLSEFWNRDEEGSGSEEDISDSDDELSLADGNEIVNNLTRSKRHSRLGVNEKLSLLQRAEENFYRNKNTDKQSIKVDKNAISDTMRGASRQRLQNALNQAQQRLDDFKIEMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSSTNLMNRLCEINASTSMNVLSETEHALTPPPALDPCAKEDTGNELSGNARSETSPGVPMESSLNAKLPQIPSFSEFVNSRKAKGDQSNDSKKHSSRVEKKMRVQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2282g00006 634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Gabi2282g00006 634 Coils Coil 471 491 - -
Gabi2282g00006 634 MobiDBLite consensus disorder prediction 553 634 - -
Gabi2282g00006 634 MobiDBLite consensus disorder prediction 574 611 - -
Gabi2282g00006 634 Pfam Helicase conserved C-terminal domain 151 256 IPR001650 -
Gabi2282g00006 634 Gene3D - 1 133 IPR027417 -
Gabi2282g00006 634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 298 IPR001650 -
Gabi2282g00006 634 MobiDBLite consensus disorder prediction 612 634 - -
Gabi2282g00006 634 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 515 - -
Gabi2282g00006 634 Gene3D - 134 360 IPR027417 -
Gabi2282g00006 634 CDD SF2_C_RecQ 134 267 - -
Gabi2282g00006 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 360 IPR027417 -
Gabi2282g00006 634 CDD DEXHc_RecQ 1 133 - -
Gabi2282g00006 634 FunFam RecQ family DNA helicase 134 359 - -
Gabi2282g00006 634 Pfam RecQ zinc-binding 271 342 IPR032284 -
Gabi2282g00006 634 MobiDBLite consensus disorder prediction 383 407 - -
Gabi2282g00006 634 SMART helicmild6 177 258 IPR001650 -
Gabi2282g00006 634 NCBIfam RecQ family ATP-dependent DNA helicase 2 347 IPR004589 GO:0004386|GO:0006310
Gabi2282g00006 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 127 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2282g00006 Gabi-Chr2282 62785 88755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2282g00006 149 273 Eukaryotic Initiation Factors Gene Family AT3G19760 24.800 2.81e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2282g00006 K10901 - gmx:100819601 1001.12