Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2282g00004 ATGGCACTAAAGAAGAAAGGAATTACTGCGGAATTTCTCTCCTCAACGAAAACGGCAGAAGCAAAAAATAAGATTCATGAGGACCTTGATTCTGGAAAACCTTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACACCTGGGTTTATGTCAAAGCTGTCAAAGATTTATGCTAGGGGGTTGCTAAGTCTCATTGCCATAGATGAGGCGCATTGCATCTCAACTTGGGGCCATGATTTCAGACCTAGCTATCGTAAGCTTTCATCTTTAAGAAGCCGCCTACCAGATGTACCAGTATTAGCTCTGACCGCCACTGCTGTTCCTAAGGTTCAGAAGGATGTCGTAGATTCCTTGCAGATGCAAAATCCATTAATACTGAAATCTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAAATCTATTGGATGATGCTTATGCTGATTTATGTAATACACTCAAATCTAAGGGAGATGTCTGTGCAATAATTTATTGCCTTGAACGTTCAATGTGTGATGACTTGTCGGCTAATCTATCCCAAAGTGGCATTTCCTGTGCTGCTTATCATGCAGGATTGAATAATAAAATGCGAACTTCTGTGTTAGATGATTGGATTTCTTCCAAGATAAAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTCAGAATTGTGTGCCACTTCAATATTCCCAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCTTCAACAAGTCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATATTAAGCAACTCAGGGAGCAAGAAGTTACAGTCATCAAATTCACAAGAAGAATCATCCAGAGTGTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGCGAAGGATCTGGATGTCGTAGAAAAAGAATTCTCGAGAGTTTTGGAGAACAGGTAACTGCGTCACTATGTGGAAAAACATGTGATTCCTGCAGACATCCAAACTTAGTTGCCAGATATTTGGAGGATCTCACAACTGCCTGTGCTCTACGGCAGAAAAATGGTTCTTCTCGAGTTTTTATCACCAGTTCCACTGATGCAATCAACGAAAAACAGTTATCTGAATTCTGGAATCGGGATGAGGAAGGAAGTGGATCAGAGGAGGATATTTCTGACTCAGATGATGGTAATGAGATTGTCAACAACCTAACCAGGTCAAAGCGTCATTCCAGATTGGGAGTAAATGAAAAGCTTTCTTTGTTACAACGGGCAGAAGAAAACTTCTATCGAAACAAGAACACTGATAAACAGAGCATCAAAGTTGACAAGAATGCTATTTCCGATACGATGCGAGGAGCAAGCAGGCAAAGACTGCAGAATGCTCTAAATCAGGCTCAGCAACGTTTAAAACATTTATTCAGGATTGAAATGGAAACATCAGCATCTTTCCTCGAAGATGAATGCTACAAGAAATATGGCAAGGCTGGCAAGTCTTTCTATTATTCACAAGTGGCAAGTACTGTAAGGTGGCTGACGACTACAAGTTCTACCAATCTGATGAACCGACTTTGTGAAATTAATGCTTCCACATCAATGAATGTCTTGTCTGAAACTGAACATGCCCTCACACCACCACCTGCTTTAGATCCTTGTGCAAAAGAAGATACTGGCAATGAACTCTCGGGCAATGCTAGATCAGAAACTTCCCCAGGTGTGCCAATGGAAAGTTCTTTGAATGCGAAGTTGCCACAAATACCATCCTTCTCTGAATTCGTAAACAGTAGGAAAGCAAAGGGGGACCAATCAAATGACTCAAAAAAACATTCATCAAGAGTAGAAAAGAAGATGAGGGTACAATAA 1890 0.4042 MALKKKGITAEFLSSTKTAEAKNKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLSKIYARGLLSLIAIDEAHCISTWGHDFRPSYRKLSSLRSRLPDVPVLALTATAVPKVQKDVVDSLQMQNPLILKSSFNRPNIYYEVRYKNLLDDAYADLCNTLKSKGDVCAIIYCLERSMCDDLSANLSQSGISCAAYHAGLNNKMRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKRMEFILSNSGSKKLQSSNSQEESSRVSLTAFNQMVEYCEGSGCRRKRILESFGEQVTASLCGKTCDSCRHPNLVARYLEDLTTACALRQKNGSSRVFITSSTDAINEKQLSEFWNRDEEGSGSEEDISDSDDGNEIVNNLTRSKRHSRLGVNEKLSLLQRAEENFYRNKNTDKQSIKVDKNAISDTMRGASRQRLQNALNQAQQRLKHLFRIEMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTTSSTNLMNRLCEINASTSMNVLSETEHALTPPPALDPCAKEDTGNELSGNARSETSPGVPMESSLNAKLPQIPSFSEFVNSRKAKGDQSNDSKKHSSRVEKKMRVQ 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2282g00004 629 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Gabi2282g00004 629 MobiDBLite consensus disorder prediction 386 414 - -
Gabi2282g00004 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 127 IPR027417 -
Gabi2282g00004 629 Gene3D - 134 360 IPR027417 -
Gabi2282g00004 629 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 146 298 IPR001650 -
Gabi2282g00004 629 MobiDBLite consensus disorder prediction 548 629 - -
Gabi2282g00004 629 NCBIfam RecQ family ATP-dependent DNA helicase 2 347 IPR004589 GO:0004386|GO:0006310
Gabi2282g00004 629 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 360 IPR027417 -
Gabi2282g00004 629 MobiDBLite consensus disorder prediction 569 606 - -
Gabi2282g00004 629 Coils Coil 465 485 - -
Gabi2282g00004 629 CDD SF2_C_RecQ 134 267 - -
Gabi2282g00004 629 Gene3D - 1 133 IPR027417 -
Gabi2282g00004 629 Pfam RecQ zinc-binding 271 342 IPR032284 -
Gabi2282g00004 629 MobiDBLite consensus disorder prediction 607 629 - -
Gabi2282g00004 629 CDD DEXHc_RecQ 1 133 - -
Gabi2282g00004 629 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 476 - -
Gabi2282g00004 629 FunFam RecQ family DNA helicase 134 359 - -
Gabi2282g00004 629 SMART helicmild6 177 258 IPR001650 -
Gabi2282g00004 629 Pfam Helicase conserved C-terminal domain 151 256 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2282g00004 Gabi-Chr2282 62785 88755 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2282g00004 149 273 Eukaryotic Initiation Factors Gene Family AT3G19760 24.800 2.62e-08 54.7