Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2281g00002 ATGGGTTCTGGGAGGAAGAAGCGTCAAAGAAGCTTCACAAAAAAAAAGCTTCGAATCAATGAACGTGTTGAGTTGAGGAGTGTAGAGGATGGGTTTCTGGGGTCATGGCACCCGGCGACAGTTATCCATTGCGGGAAGCTGGAGCGCCATGTCAGATATGAGAATATTTTGGATGATGATGGGATTAAGAATTTTGAGGACGTAGTGAGTGTTTCGGATGCTTTGGATGGTAAAAGTTGTTCTTCAGATTGCTATAAGCGCGGTTTCATTAGGCCAGTGCCTCCTTTGATTGAGTTGGATAAAAGGAACCTTAAATTTGGTCTGTGTGTTGATGTGAACTATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACAATGATGAGAAGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAATGTTGGAATCCACCAACTTCGGATTACTCAGGACTGGGATGAAGTTACAGAGAAGTGGGAGCAGCGAGGGAAATGGGTGTTTCTTGAATTAATTGAGGAGTGTGAGAGGACATCATTTGTTACAGTTTCAGCAAAGCAGATTTGGTATGATGTACAGGGAAAAAGTGATTTTGACAGGATTGAGGAATGGACATTCAATGTGAAGGACTTATGGAGAGACATGGTAATGGAGGTAGTTAATGATTACTTTGCTATTACTGTAGAAGTAGTTTTCTCAGTCTTAAACCTTCCAAGGAGTTTATTCAATGAAACACCAGAGGTGGAGCCAGTTGAACCTGTGGCTAATGGGCACTTGAACACAACATTACCTGAAAAGGAAATCTTGATGCAGAAAGATCCTCTTCCTCCAATTGAAGAGGTCTTATCAGAGTTTCAAACTGAAATTTCCTCCGATTGTGCTGTTGAAGTAGTTTCAGGTGCTAACTGTTTTAAAAATAAGAGAGAAAATAGATCCTCGACTCTTTTAAGGTCCACACGCTGGAAACCTCTTATGTTGTCTGAAGTTGAATTTTGTCCTGATGCCGTTAAGCAATATGCACTTGCTTCACCTATTTGTTGGAGCATGGAACTTTGGAGAAAAAAATTACAAAAACATATTGCTTATCTTGGTTGGAAAATTGAGTGGAATGCAGATAGTGTTGGTGATAAACATTACAGGTACAAGTCGCCTGACAAACAGGACCAGAAGATTTTCCCCTCACTCATTGAAGTTTGTAAAGTCATGCAAAAGGACTCAAACACAATCTCTTTGCCGTCCCAAGATGATGAGAGTATAAGGCATCGTACCATTGACTCAATCAGTAATGAGGAAAATGTTGATCAAGTTCAGAGTGGTGATTTATTACATAGAGTATCCCAATTGCTTCCGGAGAAACCTTCATTACATGGCATAGATGGTGTAGCTGCAAGCAGATCTACTGCAAATCGGAAGCGGAAACGGAAACGCTTGAGGAATTCAAAGGCTAGCCTACCTAAGCGCCAAAGGAATAGATTACCTCTACGAGTGCTACTACGATCAAGTAAAAGGGTGCAACAGGTGTCTGCCCCTTGTTTGTCACACCATAAACTTCAAAATGTTCTGTCTTGGTTGATAGACAGCAACGTAGTGCTACCAAGGTCTAAGGTTTATTACCAGGCAAAAAGCAGGCACCATTCTATGGCTGATGGACGAATAACTCGCGATGGAATCAAATGTAACTGTTGTCAGACTGTATTCAGTCTTGTTGGCTTTGAAAATCATGCTAGCGGTAGTAGTACCCGCAGACCCACTTCTAGTATCTTTCTAGAAGATGGTAGGTCACTCTTAGATTGCCAGATACAATTAATGCAAGACCATAGGATAAGGGAAACTATGGAAAAACCATGCGATGGTTTGTCTCAAGGCAAGAATGACTACATTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGTCCGTCTTCATTTCATAAGACATGTCTTGGTATGGAGGATATTCCTGATGGTGACTGGTTTTGTCCATCGTGTCGTTGTGGGATTTGTGGCCGACGCAAAATCAATGGAGATGAGGATGGACATTTCCTTACTTGCATTCAGTGTGAACATAAATATCATTTTAGGTGCGTGAAAAATAAAGCTGTAGATAAATCAAGAAGGTACCTGAAAAAAAACTGGTTCTGTGGAAAAAACTGTGAAAAGATATATGCCGGCCTGCACAAACTATTAGGAGTGCCAGCTTCAGTGGGTTTGGACAATCTAACTTGGACATTGGTGAAGTTTATCAATTCTGAGAGCTGTGATCGTGGTAGTACTAAAAGTGACTTATTGGTAGAAAGTTACAGCAAACTTAATGTTGCTCTTTCGGTGATGCATGAATGTTTCGAGCCCCTAAAGGAACCTTACTCTAGCAGAGATCTCATGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGATTAAATTTCCAGGGTTTCTATACTGTACTTCTGGAGAGAAATGAAGAACTGATTAGTGTGGCAACTGTTAGGGTCTATGGAGATAAGGTAGCAGAAATACCTCTTGTTGGTACCAGATCACAGTATCGTCGCCATGGAATGTGTCGCGTTTTAATGACTGAGCTTGAAAAGAAGCTCATGCAATTAGGAGTTGAGAGGCTCGTTTTGCCTGCTGTTCCTAGTGTGCTAGAAACGTGGACAAGTTCTTTCGGCTTTGCAAAGATGACAAATCTTGAGAGATCAGAATTTCTGGACTATACTTTCCTAGATTTTCAGGGTTCCATCATGTGCCAGAAGCTGTTAACAAAGATTCCATCTCCAGATTCAGTTTCGTCAATAGATGCCCAACAAAAACAAAATGATGTTTTCTCTGGAAGTTGTAGGGTTGACTTTGAAAAGTCTAGTCCAGACTCTGAAGTATACCAAGCAGAAGAGATTGACAACAGAGGGTTGATGGATCAACAAATGGGGGTTACTTGTGCAGACAACAATGATCATCTTGGTAGCAGTGTTATTGACCCGGTCACCATGGTGAAGCAACTAAGTCCTGAGGATCAACAGTGCCATAATAGAACCAATCCACAGTGCTCTCTTGTAAAAGAGGGTGGTAGGTATAGTGGCTCATATAAGTACTACAGTCGAAGGAAAGTGAGGAAGGCTTGA 3147 0.4125 MGSGRKKRQRSFTKKKLRINERVELRSVEDGFLGSWHPATVIHCGKLERHVRYENILDDDGIKNFEDVVSVSDALDGKSCSSDCYKRGFIRPVPPLIELDKRNLKFGLCVDVNYQEAWWEGVIFDHNDEKEERSVFFPDLGDEMNVGIHQLRITQDWDEVTEKWEQRGKWVFLELIEECERTSFVTVSAKQIWYDVQGKSDFDRIEEWTFNVKDLWRDMVMEVVNDYFAITVEVVFSVLNLPRSLFNETPEVEPVEPVANGHLNTTLPEKEILMQKDPLPPIEEVLSEFQTEISSDCAVEVVSGANCFKNKRENRSSTLLRSTRWKPLMLSEVEFCPDAVKQYALASPICWSMELWRKKLQKHIAYLGWKIEWNADSVGDKHYRYKSPDKQDQKIFPSLIEVCKVMQKDSNTISLPSQDDESIRHRTIDSISNEENVDQVQSGDLLHRVSQLLPEKPSLHGIDGVAASRSTANRKRKRKRLRNSKASLPKRQRNRLPLRVLLRSSKRVQQVSAPCLSHHKLQNVLSWLIDSNVVLPRSKVYYQAKSRHHSMADGRITRDGIKCNCCQTVFSLVGFENHASGSSTRRPTSSIFLEDGRSLLDCQIQLMQDHRIRETMEKPCDGLSQGKNDYICSVCHYGGELILCDQCPSSFHKTCLGMEDIPDGDWFCPSCRCGICGRRKINGDEDGHFLTCIQCEHKYHFRCVKNKAVDKSRRYLKKNWFCGKNCEKIYAGLHKLLGVPASVGLDNLTWTLVKFINSESCDRGSTKSDLLVESYSKLNVALSVMHECFEPLKEPYSSRDLMEDVIFSRWSELNRLNFQGFYTVLLERNEELISVATVRVYGDKVAEIPLVGTRSQYRRHGMCRVLMTELEKKLMQLGVERLVLPAVPSVLETWTSSFGFAKMTNLERSEFLDYTFLDFQGSIMCQKLLTKIPSPDSVSSIDAQQKQNDVFSGSCRVDFEKSSPDSEVYQAEEIDNRGLMDQQMGVTCADNNDHLGSSVIDPVTMVKQLSPEDQQCHNRTNPQCSLVKEGGRYSGSYKYYSRRKVRKA 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2281g00002 1048 PANTHER PHD FINGER PROTEIN 12 341 1014 IPR042163 GO:0003714|GO:0045892
Gabi2281g00002 1048 SUPERFAMILY FYVE/PHD zinc finger 612 672 IPR011011 -
Gabi2281g00002 1048 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 809 909 IPR016181 -
Gabi2281g00002 1048 CDD Tudor_Agenet_AtDUF_rpt1_3 17 95 - -
Gabi2281g00002 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 729 IPR013083 -
Gabi2281g00002 1048 MobiDBLite consensus disorder prediction 471 489 - -
Gabi2281g00002 1048 Pfam Acetyltransferase (GNAT) family 803 887 IPR000182 GO:0016747
Gabi2281g00002 1048 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 673 IPR013083 -
Gabi2281g00002 1048 Pfam Tify domain binding domain 554 606 IPR032308 -
Gabi2281g00002 1048 ProSiteProfiles Zinc finger PHD-type profile. 629 674 IPR019787 -
Gabi2281g00002 1048 SMART PHD_3 631 672 IPR001965 -
Gabi2281g00002 1048 SMART PHD_3 673 726 IPR001965 -
Gabi2281g00002 1048 Gene3D - 780 910 - -
Gabi2281g00002 1048 CDD PHD2_CHD_II 632 671 - -
Gabi2281g00002 1048 CDD NAT_SF 824 884 - -
Gabi2281g00002 1048 SMART agenet_At_2 15 98 IPR014002 -
Gabi2281g00002 1048 SMART agenet_At_2 102 159 IPR014002 -
Gabi2281g00002 1048 MobiDBLite consensus disorder prediction 460 493 - -
Gabi2281g00002 1048 Pfam PHD-finger 631 673 IPR019787 -
Gabi2281g00002 1048 Pfam Agenet domain 21 95 IPR008395 -
Gabi2281g00002 1048 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 768 918 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2281g00002 Gabi-Chr2281 40639 46903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2281g00002 26 872 PHD Transcription Factor Family AT5G58610 36.950 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2281g00002 Acetyltransf_1 7.6e-06 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2281g00002 - - vra:106763506 1066.99