Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2281g00001 ATGGCTGTAGAGGGAGTGATGGATTCTCCAAGCAAGAAGCCTCAAGGAGGATTCGCCAAAAAGAAAATGTTCTTTGGAATCAATGAACGTGTTGAGTTGAGGAGTGTTGAGGATGGGTTTCTGGGGTCATGGCACCCGGGGATAGTTATCCATTGTGAGAAGCTAAAGCGCCTTGTCAGATATGATAATATCTTAGATGATGATGAGATTAATAATCTTGAGGAGTTAGTGAATGTTTCTGAAGCTTTGGATGGTCAAAGTAGCTCTTCAGATTTCTATAAGCGCGGTTTCATTAGGCCAGTGCCTCCTTTGATTGAGTTTGATAAAAGGAACCTTAAATTTGGTGTGTGTGTTGATGTGAACTATCAGGAAGCTTGGTGGGAAGGTGTTATATTTGATCACAATGATGAGAAGGAGGAGAGGAGTGTGTTTTTCCCTGATTTGGGTGATGAAATGAATGTTGAAATTCACCAACTTCGGATTACTCAGGACTGGGATGAAGTTGCAGAGAAGTGGGAGCAGCGAGGGAAATGGGTGTTTCTTGAATTGATTGAGGAGTGTGAGAGGACATCATTTGTTGGAGTTTCAGCAAAGCAGATTTGGTATGATGTACGGGGAAAAAGTGATTTTAACAGGATTGGGGAGTGGACATTCAATGTGAAGGACTTATGGAGAGACATGGTATTGGATGTTGTTGATGAGTACTTTTCTCTTACTGCAGAAGAAGTTTTCTCAGTCTTAAACCTTCCAAGGAGTTTATTCAATGAAACACCAGAGGTGGAGTCTGTTGAACCTGTAGCTAATGGGGACTTGAACACAACATTACCTGAAAAGGAAATTTTGATGCAGAAAGATCCTCTTCCTCCATTTGAAGAGGTCTTATCAGAGTTTCAAACTGAAATCCCCCCTGATGATGCTGGTGAAGAAGTTTCAGGTTCTAGCTGTTTTGAGAATAATAGAGAAAATATATCCTCAACTCGTTCAAGGTCCGGGCATTGGAAACCTCTTAAGTTTTCTGAAGTTGAATTATGTCCTGATGCTGTTAAGCAATATGCACTTGGTTCTAAGAGCATAGCAACTAGGAAACTTTGGACTAAAAAAGTACATAAACATCTTGCATACCTTGGATGGAAAATTGAGTGGACATCTAAATTTCGTGGGTATAAACGTTACAGGTACAAGTCACCTGATGAACAGGACCAGAAGTTTTACCTCTCACTCACTAAAGTTTGTAAAGTTATGCAAAATAACTCCAAAACAAACTTCTTGATGTCCCAAAATGATGAGAGTATAATGCATCATACCTTTGACTCCCATCTTTCACATGTGCCTCTTAATCCATCCGAAAAGATTCAGGATCCAGATACTTCTCTTGCAACTTTGCCACCTCCTCCTGTTGAAGTTGTAGATGAACCAGAATTTGCAGATGAACCGGCGTTTTGTCCTCAAGCTGTTGTGGAATATTATAATGCATTCAAAAAGAACAGGACTGATAAAAGAAAATGGATACAGAAAGCAAAGAAGCATCTGCTAGCAGAAGGATGGACTTTGGAACATCATCCAACTAATAAAAGAAGGGGAATTAAATATATATGTCCACAAAAGAAAATTTTTCTGACACTCCATGCAGCATGCGGATTTTGTATCAAAGAAAGCATTCCTAAATGGACTAATTCTGGCATGCAACTTGTAAATGAAAATGACTCAGTCATTAATGAGGAAAATGTTGATCAAGTTCAGAATGGTTATTTATTAAATAGAGTATCCCAATTGCCTCCGGAGAAACCTGCATTACATGGCATAGATGGCGTAGCTGCAAGTGGATCTACTGCAAATAGGAAGCGGAAACGCTTGAGTAATTCAAAGGCTAGCCTACCTAAGCGCCAAAGGAATGGATTACCTGTACGGGTGCTTAGATCAAGTAAAAGGGTGCAAGAGGTGTCTACCCCTTCTCTGTCACACCAGAAGCCACAAAATGTTCTGTCTTGGTTGATAGACCACAATGTAGTGCTACCAAGGTCTAAGGTTTATTACCTGGAAAAAAGCCGGTACCGTGCTATGGCTGAGGGGCGAATAACTCGTGATGGAATCAAATGTAACTGCTGTCAGACAGTTTACAGTCTTGTTGGCTTTGAAAAGCATGCTAGTGGTAGTAGTACCCCCAGACCTGCTGCTAATATCTTTTTGGAAGATTATGGTAGGTCACTCTTAGATTGCCAGATTCAAATAATGCAAGATTATAGGATAAGGGAAACTAAAGAAAAACCATGCAATGGTTTGTTTCAAGGGGAGAATGACTACATTTGTTCTGTTTGCCACTATGGTGGTGAACTTATTTTATGTGATCAATGTCCGTCTTCATTTCACAAGACATGTCTCGGTTTGGAGGATATCCCTGATGGTGACTGGTTTTGTCCATCGTGTCGTTGCGGGATTTGTGGCCAAAGCAAAATCAATGGAGATGAGGATGGACATTTCCTTGCTTGTACTCAGTGTGAAAATAAATATCATGTTAGGTGCGTGAAAAGTAGAGCTGTGGATGAATCAAGAAGGTATCAGGAAAACTGGTTCTGTGGAAAAAAGTGTGAAAAGATATATGAAGGCCTCAACAAACTGTTAGGAGTGCCAGTTACAGTGGGTTTGGGCAATCTAACTTGGACACTAGTGAAGTTCAGCAACTCTGAGAGTTGTAATCTTGGCAGTGCTAAAAGTGAATTGCTAGCAGAAAGTTACTGCAAACTCAACGTTGCTCTTTCAGTGATGCATGAATGTTTCGAGCCCCTAAAGGAACCTTTCTCTAGCAGAGATCTCGTGGAAGATGTTATATTCAGCAGATGGTCAGAGCTTAATCGGTTAAATTTCCAGGGTTTCTATACCGTACTTCTGGAAAGAAATGAAGAACTGATTAGTGTGGCAACCATTAGGATCTATGGAGATAAGGTTGCAGAAATACCTCTTGTTGGTACCAGATTACAGTATCGTCGACATGGAATGTGTCGCATTTTAATGAATGAGCTTGAAAAGAAGCTCATGCAATTAGGAGTTGAGAGGCTTGTGTTGCCTGCTATTCCTAGTGTGCTAGAAACGTGGACAAATGCTTTTGGGTTTGCAGAGATGACAAATTTTGAGAGATCAGAATTTCTGGACCATACATTCCTAGATTTCCAGGGTACCATCATGTGCCAGAAGCGGTTGGAAAAGATTCCTTCTCCAGATTCAGTTTTGTCAAAAGATTCCCAACTAAAACAAATTGATGTTTTCAATGGAAGTTGTAGTGTTGACTTTGATAAGCCTTGTCCAGACTCTGAAGTATACCAAGCTAAAGAGATTGACAAAAGAGGGATGATGGATCAACAAATGAGGGATACTTGCGCACGCAACAATGATCACCTTGGCAATGGTGTTATTGACTCAGTCACCATGGTGAAACAACTAAGTGCCGAGGATCAACGGTGCCAGAATGGAACCATTCCACAGTGCTCACTTGTACAAGAATCTGCTGGCAAGTTTAGTGGCTCATATAAGTACTACATCCGTCGGGAAGTGAGAAAGAAAGGCTAG 3561 0.4072 MAVEGVMDSPSKKPQGGFAKKKMFFGINERVELRSVEDGFLGSWHPGIVIHCEKLKRLVRYDNILDDDEINNLEELVNVSEALDGQSSSSDFYKRGFIRPVPPLIEFDKRNLKFGVCVDVNYQEAWWEGVIFDHNDEKEERSVFFPDLGDEMNVEIHQLRITQDWDEVAEKWEQRGKWVFLELIEECERTSFVGVSAKQIWYDVRGKSDFNRIGEWTFNVKDLWRDMVLDVVDEYFSLTAEEVFSVLNLPRSLFNETPEVESVEPVANGDLNTTLPEKEILMQKDPLPPFEEVLSEFQTEIPPDDAGEEVSGSSCFENNRENISSTRSRSGHWKPLKFSEVELCPDAVKQYALGSKSIATRKLWTKKVHKHLAYLGWKIEWTSKFRGYKRYRYKSPDEQDQKFYLSLTKVCKVMQNNSKTNFLMSQNDESIMHHTFDSHLSHVPLNPSEKIQDPDTSLATLPPPPVEVVDEPEFADEPAFCPQAVVEYYNAFKKNRTDKRKWIQKAKKHLLAEGWTLEHHPTNKRRGIKYICPQKKIFLTLHAACGFCIKESIPKWTNSGMQLVNENDSVINEENVDQVQNGYLLNRVSQLPPEKPALHGIDGVAASGSTANRKRKRLSNSKASLPKRQRNGLPVRVLRSSKRVQEVSTPSLSHQKPQNVLSWLIDHNVVLPRSKVYYLEKSRYRAMAEGRITRDGIKCNCCQTVYSLVGFEKHASGSSTPRPAANIFLEDYGRSLLDCQIQIMQDYRIRETKEKPCNGLFQGENDYICSVCHYGGELILCDQCPSSFHKTCLGLEDIPDGDWFCPSCRCGICGQSKINGDEDGHFLACTQCENKYHVRCVKSRAVDESRRYQENWFCGKKCEKIYEGLNKLLGVPVTVGLGNLTWTLVKFSNSESCNLGSAKSELLAESYCKLNVALSVMHECFEPLKEPFSSRDLVEDVIFSRWSELNRLNFQGFYTVLLERNEELISVATIRIYGDKVAEIPLVGTRLQYRRHGMCRILMNELEKKLMQLGVERLVLPAIPSVLETWTNAFGFAEMTNFERSEFLDHTFLDFQGTIMCQKRLEKIPSPDSVLSKDSQLKQIDVFNGSCSVDFDKPCPDSEVYQAKEIDKRGMMDQQMRDTCARNNDHLGNGVIDSVTMVKQLSAEDQRCQNGTIPQCSLVQESAGKFSGSYKYYIRREVRKKG 1186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2281g00001 1186 MobiDBLite consensus disorder prediction 604 630 - -
Gabi2281g00001 1186 SUPERFAMILY FYVE/PHD zinc finger 749 809 IPR011011 -
Gabi2281g00001 1186 CDD Tudor_Agenet_AtDUF_rpt1_3 25 103 - -
Gabi2281g00001 1186 SMART PHD_3 768 809 IPR001965 -
Gabi2281g00001 1186 SMART PHD_3 810 863 IPR001965 -
Gabi2281g00001 1186 Pfam Tify domain binding domain 690 742 IPR032308 -
Gabi2281g00001 1186 PANTHER PHD FINGER PROTEIN 12 478 1154 IPR042163 GO:0003714|GO:0045892
Gabi2281g00001 1186 CDD PHD2_CHD_II 769 808 - -
Gabi2281g00001 1186 Pfam Acetyltransferase (GNAT) family 939 1020 IPR000182 GO:0016747
Gabi2281g00001 1186 SMART agenet_At_2 23 106 IPR014002 -
Gabi2281g00001 1186 SMART agenet_At_2 110 167 IPR014002 -
Gabi2281g00001 1186 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 904 1054 IPR000182 GO:0016747
Gabi2281g00001 1186 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 945 1044 IPR016181 -
Gabi2281g00001 1186 Pfam PHD-finger 768 810 IPR019787 -
Gabi2281g00001 1186 Pfam Agenet domain 29 103 IPR008395 -
Gabi2281g00001 1186 Gene3D - 914 1047 - -
Gabi2281g00001 1186 SUPERFAMILY FYVE/PHD zinc finger 810 859 IPR011011 -
Gabi2281g00001 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 865 IPR013083 -
Gabi2281g00001 1186 ProSiteProfiles Zinc finger PHD-type profile. 766 811 IPR019787 -
Gabi2281g00001 1186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 810 IPR013083 -
Gabi2281g00001 1186 CDD NAT_SF 960 1020 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2281g00001 Gabi-Chr2281 14423 31417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2281g00001 34 462 PHD Transcription Factor Family AT5G58610 34.081 4.09e-67 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gabi2281g00001 Acetyltransf_1 2.8e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2281g00001 - - aprc:113851199 1425.61