Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2280g00001 ATGAATCAACTGAGCACAATGAAGTTGACACTTGAGGATGAGTTGCAAGCTTTACTGTTGATGAAACAGGCACAGAGTCGCCAGAAGAGCTATTATGGTCACAAGCATCGACCTCTGGAGTTTGCAGAGGGTGAGCATGCCTTTGTGAGGTTGTCACCTGTGACAGGTGTGGGGCGTGCTCATGGAGTAAGAAAGCTAAGTCCCAGGTTTATCGATCTCTATCAGGTAATAGAAAGGGTGGGACCGGTTGCTTATCAGCTTGCCTTGCCTCCACAATTATCCGGCATTCATGATGTATTCCACGTGTCTCAGCTTCGGAGATACATTCGGGATGAATCTCATGTTGTACAGCCTGACGAGGTTCAGATACAGGATAATCTTAAGACTCCTACAATGTCTTCTTCTTCATCCTCGAATCATCGATGGGTCTACGACGTGTTCCTGAACTTCAGAGGGGAAGACACTCGTGACAACATCGTTTCTCATCTCTACGCTTCACTTTCAAATGCTGGAATCAACACTTACATCGATGACGAGCTTCCCAAGGGGAAAAAGCTGGAATCTGAACTATTTCGAGCAATAAAAAAGTCTCAGATAGCTTTGGTTGTTTTCTCCGAAAGATATTCGGAATCTAGTTGGTGTCTTATGGAGCTCGAACAAATAATGGAGCGTTACCAAAGACGTCGCCAGGTGGTTGTGCCCATATTTTACGGTGTTGACCCATCGGTTGTACGTAAACAGACGGGTGAATTTGGAGAAGTACTGGAAAAACTTGCAAAACAAAAAAAGTTGTCAGGTACAACGTTGGATAAAGTGGTGCGGGGATGGAGGAGGGCACTCACCCGAATTGCAAATTTGTCTGGTTGGGACATGAAGAATTGCAGGAGTGAAGCTGAACTAGTGAAGAAAATTGTTCACGACGTTTTGTCAAAATTAGACAACGGATTATTGTCTATTACCGATTTTCCCGTTGGATTAGAATCTCGTTTGCAAGAAGTGATTGGGTTAATTGAAAATCAATCAAGCAAAGTTTGTATGGTAGGGATCTGGGGTATGGGTGGATCGGGCAAAACCACCACAGCCAAAGCCATCTACAATAAAACTCATCGCAAATTTGTGCATAAAAGTTTCATTGAAAATATCAGAGAAGTTTGTGAAAGAGATAGCAGAGGGCACATTGATTTACAGCAACAACTTCTTTCTGATGTCCTGAAAGCAAAAGTTGAAATACACAGCATTGCGATGGGGACAACAATGATCGAAAAGAGACTTTGTGGAAGAAGGGCACTCTTTGTATTTGATGATGTGACCAAGTTTGAGCAATTAAAAGCCCTTTGTGGACATCGTAAGTGGATTGGTAAAGGAAGTGTGATAATCATTACAACTAGAGATATGCGCCTACTTACAGAACTTAAAGTTGACTGTGTTTGTAGAATGAAGGAAATGGACAAAAATGAGTCACTTGAGCTCTTTAGTTGGCATGCTTTTGGACAAGCAAGTCCAGTAAAATACTTCACTGAACTCTCACAAAATGTGGTTGCTTACTGTGGAGGACTACCACTAGCTCTTGAAGTCCTTGGATCTTACTTATATGAGAGGACAAAACAAGAATGGGAAAGTGTATTATCAAAACTGGAAATAATTCCCAATGATCAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTAGGGGACCAGATGGAAAAGGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGACAGATCATACGTTACAGAGATACTAAATGGTTGTGGACTTCATGCTGATATTGGAATAACAGTGTTGATAGAAAGGAGCCTCATAAAAGTTGAAAAGAATAACAAGCTTGGAATGCATGATTTGCTACGTGACATGGGAAGAGAAATTGTTCGTCAAACTTCACCTGAAGAACCGGAGGAACGCAGTCGATTGTGGGTTCATGAGGATGTACTTGATGTATTGACACAGCATACTGGAACACAGGCTATTCAGGGATTGGCTTTTAAGTTGCAAGGAACTAGTAGAGTTTGCTTCCATACCAAAGCATTTGAGAAAATGAAGAGACTGAGACTTCTGCAACTTGATTGTGTAAAACTTGATGGAGATTATGAGTATCTTTCCAAACTCCTTAGATGGGTCTGTTGGCAAAGATTTCCTTTAAAATACATACCTGACAACTTTTATTTGGGAAAAGCAGTTGCTATCAACTTAAAACACAGTAATCTTTACCAAGTATGGAAGGAGCCCCAGTTGTTGGAGGGGTTAAAATTCCTCAATCTTAGTCATTCCAGGTACTTGACAAACACCCCTGATTTTTCAAAACTACCGAATCTTGAAAAACTCATTCTCAAAGATTGTACAAGCTTGTCCGAGGTACACCAATCCATTGGAGATCTAAGTAAACTTCTTCTGATAAATTTGAAGGATTGTAAAAGCCTTAGTAATCTCCCAAGGAGGATCTATGAGTTGAAATCTGTGAAAACTCTCATACTTTCTGGTTGTTCAAAGATTGACAAGTTAGAAGAAGATATAGTGCAGATGGAATCCTTGACAACTCTGATTGCAAACAATACTGCTGTAAAACAGGTGCCCTTTTCAATAATAAGATCCAAAAGCGTTGGATATATTTCTCTATGTGGATATGAAGGATTAACACGTGATGTGTTTCCTTCTCTCATATGGTCTTGGATGTCACCAACAATGAATCCCCTATCCAGCATTCCACCATTTAGGGGCATGTCATCGTCTCTAGTTTCCATGAATCTACATATTAATAATTTGGGCTCTCTATCACCAATGCTTAAGAACCTTTCAAAACTTCGATGTGTTTGTGTGAATTGCATCTCGGAGTTTCAATTAACTCAAGGATTGCGAAGAATTCTAGATGACCTATGTGATGTAAATTTTCCTGAAATGGAAACAACATCATATGCATCCCAAATTTCAAATCTTTCATTGAGATCGCTTTTAATTGGAATGGGAAGTTGCCATATGGTCATGGATACCCTTGGCAAGAGCATATCACAGGGATTGACAAACAATGGTTCTAGTGATTACTTCCTTCCGGGTGATAATTGTCCAAATTGGTTAGCCTATACAGCTGAAGGACATTCAGTGTTTTTTCAAGTGCCTGAGGATAGTGATCGTCCCATAAAGGGAATGATTTTATGTGTTATATATTCATCAACCACTGAAAACAAGGGTGTTGAATGTCTTATTAGCGTCTTGATCATTAATTACACAAAGTGCACTATCCATGTATACAAGCGAGACACAGCAATGTCCTTTAATGATGAAGATTGGCAGGGTGTAAAATCAAATCTAGGAGCAGGTGACAATGTGGAGATTTTTGTAGCTTTTAGGCATGGAGTGATTGTTAAGAAGACAGCTGTATATCTAATATATGGCCAGTCAATTGTGAAAATTGAGCAATCAATTCGGATGGAAATAGAACCATCACCTAAAGTGAAAAGGGAGCCATCACTGATGTCAAATAAAAATATCTTCACAATACTTACAAAGAGAATGAGAGAATGTTTATGCTTGAACCGGAATTGA 3570 0.395 MNQLSTMKLTLEDELQALLLMKQAQSRQKSYYGHKHRPLEFAEGEHAFVRLSPVTGVGRAHGVRKLSPRFIDLYQVIERVGPVAYQLALPPQLSGIHDVFHVSQLRRYIRDESHVVQPDEVQIQDNLKTPTMSSSSSSNHRWVYDVFLNFRGEDTRDNIVSHLYASLSNAGINTYIDDELPKGKKLESELFRAIKKSQIALVVFSERYSESSWCLMELEQIMERYQRRRQVVVPIFYGVDPSVVRKQTGEFGEVLEKLAKQKKLSGTTLDKVVRGWRRALTRIANLSGWDMKNCRSEAELVKKIVHDVLSKLDNGLLSITDFPVGLESRLQEVIGLIENQSSKVCMVGIWGMGGSGKTTTAKAIYNKTHRKFVHKSFIENIREVCERDSRGHIDLQQQLLSDVLKAKVEIHSIAMGTTMIEKRLCGRRALFVFDDVTKFEQLKALCGHRKWIGKGSVIIITTRDMRLLTELKVDCVCRMKEMDKNESLELFSWHAFGQASPVKYFTELSQNVVAYCGGLPLALEVLGSYLYERTKQEWESVLSKLEIIPNDQVQEKLRISFDGLGDQMEKDIFLDICCFFIGKDRSYVTEILNGCGLHADIGITVLIERSLIKVEKNNKLGMHDLLRDMGREIVRQTSPEEPEERSRLWVHEDVLDVLTQHTGTQAIQGLAFKLQGTSRVCFHTKAFEKMKRLRLLQLDCVKLDGDYEYLSKLLRWVCWQRFPLKYIPDNFYLGKAVAINLKHSNLYQVWKEPQLLEGLKFLNLSHSRYLTNTPDFSKLPNLEKLILKDCTSLSEVHQSIGDLSKLLLINLKDCKSLSNLPRRIYELKSVKTLILSGCSKIDKLEEDIVQMESLTTLIANNTAVKQVPFSIIRSKSVGYISLCGYEGLTRDVFPSLIWSWMSPTMNPLSSIPPFRGMSSSLVSMNLHINNLGSLSPMLKNLSKLRCVCVNCISEFQLTQGLRRILDDLCDVNFPEMETTSYASQISNLSLRSLLIGMGSCHMVMDTLGKSISQGLTNNGSSDYFLPGDNCPNWLAYTAEGHSVFFQVPEDSDRPIKGMILCVIYSSTTENKGVECLISVLIINYTKCTIHVYKRDTAMSFNDEDWQGVKSNLGAGDNVEIFVAFRHGVIVKKTAVYLIYGQSIVKIEQSIRMEIEPSPKVKREPSLMSNKNIFTILTKRMRECLCLNRN 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2280g00001 1189 SMART till_3 143 286 IPR000157 GO:0007165
Gabi2280g00001 1189 Gene3D - 481 565 IPR042197 -
Gabi2280g00001 1189 SUPERFAMILY Toll/Interleukin receptor TIR domain 133 289 IPR035897 -
Gabi2280g00001 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 576 IPR027417 -
Gabi2280g00001 1189 PRINTS Disease resistance protein signature 346 361 - -
Gabi2280g00001 1189 PRINTS Disease resistance protein signature 825 841 - -
Gabi2280g00001 1189 PRINTS Disease resistance protein signature 516 530 - -
Gabi2280g00001 1189 PRINTS Disease resistance protein signature 423 437 - -
Gabi2280g00001 1189 Pfam NB-ARC domain 331 546 IPR002182 GO:0043531
Gabi2280g00001 1189 FunFam Disease resistance protein (TIR-NBS-LRR class) 140 314 - -
Gabi2280g00001 1189 Gene3D - 141 312 IPR035897 -
Gabi2280g00001 1189 Gene3D - 313 476 IPR027417 -
Gabi2280g00001 1189 ProSiteProfiles TIR domain profile. 142 312 IPR000157 GO:0007165
Gabi2280g00001 1189 SUPERFAMILY L domain-like 622 951 - -
Gabi2280g00001 1189 Gene3D Ribonuclease Inhibitor 676 1001 IPR032675 -
Gabi2280g00001 1189 Pfam TIR domain 144 319 IPR000157 GO:0007165
Gabi2280g00001 1189 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 144 934 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2280g00001 Gabi-Chr2280 5870 16177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2280g00001 130 871 WRKY Transcription Factor Family AT4G12020 30.508 7.82e-82 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2280g00001 - - gmx:100815297 1354.73