Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2277g00038 ATGGACGGCCCTTCTCCAATGCTTCTTTCCACTCTCGTCCTCGTCTTCTCTCTTGCAGCACCTGCAATGGTCCTCAGTGCCACCGACCCAAACGATGTCAAAATCCTCAACGATTTCAGAAATGGGTTGGATAACCCGGAGCTGCTTCCATGGCCTAAAAATGGTGGAGACCCATGTGGAACCCCTCTTTGGAATTACATATACTGTGATGGAAACAGAGTTTCCCAGATTCAAGCTAAGAACTTGAACCTCAGTGGTCCCTTACCGCAGAACCTGAACCAGCTCACCATGCTCTTCAACTTGGGCCTTCAGAACAACAAGCTCAACGGTCCCTTGCCATCGTTCAGTGGGTTGTCTAAGCTGAAATATGCTTATTTGGACAACAACAACTTCGATTCCATCCCTTCAGATTTCTTCGACGGGCTCGAGAGTTTGGAAGTTCTGGCTTTGGATCGCAACAACCTCAATGCTAGCACTGGTGGGTGGCAATTCCCTTCTTCGTTGCAGGGTTCCACGCAGTTGACCAATCTTACTTGCGCGAGTTGTAACTTGGCCGGTCCCTTGCCGGATTTTCTCGGGAAGATGAACTCTTTGTCGTTTTTGATACTTTCCGGCAACAATTTGACCGGAGAGATCCCGGCGAGTCTAAACGGCACCGCTTTGCAGCTTCTATGGTTGAATAACCAGCAGGGTAAGGGTCTTACTGGGACTATTGACTTGGTGGCCACCATGGTTTCGCTCTCGAGTTTGTGGCTTCATGGGAACAGTTTCACTGGGTCCATTCCGGAGAACATTGGGGACTTGACTTCTCTGAAGGATCTCAACCTCAATAGCAACCAGCTTGTTGGGCTAATCCCTGATGCCTTAGGTAAAATGCAACTGGACAATCTGGATTTGAGCAATAACCATTTGATGGGTCCGATCCCAAATTTTAAAGCGTCTAAAGTATCTGATGATTCCAATGATTTTTGTCAAAGCAAACCCGGGGTTCCCTGCGCCTTTGAAGTCATGGCGCTTTTGGGATTTCTTGATGGGTTGAATTATCCTTCAAATCTTGTTAATTCCTGGACTCTTAATAACCCTTGCGAGGGGAATTGGTTGGGAATTAAGTGCAATGCCAATGGAAAGGTGTCTATGATTAATTTGCCAAACTTTAATCTTACTGGTACTCTAAGTCCTTCTGTTGCAAATTTAGGTTCTCTTGTTGAAATTCGATTGGAGGGTAACAATCTCAGTGGTGTAGTACCTAGTAACTGGACTAGCTTGACATCTCTGACATTGTTGGATCTGAGTGGCAATAACATTTCCCCTCCGCTGCCAAAGTTCACTAATAATGGCTTGAAAATTATGACTGAGGGGAATCCTTTGTTAAATGGTAGCCCGGAAGCTCCTTCCTCAGGGAACAAGAGTCCACCATCTGGATCTGGGAAGGCTGAACCTACACCAGGAAACTCAAATTCAAGTTCAAATAATTCTCATGAAACAACAAAATCCAAAACGAAAAGCTTGGTTTCAATTGTAGCCCCCATTGCGGGTGTGGCTGCTGCAGCTTTTCTTCTCATTCCACTTTATGTATATTATTTCAGGAGGAGAAAGGATGGTGATTCACTAGTAATTCACCCTAGAGATCCATCTGATTCAGACAATACTGTAAAGATTACGGTTGCTAACAATACCAATGGAAGCATTTCCACTGTAACAGGGAGTGTGTCTGGGAGTAGAAACAGCAGTGGAATTGGGGATTCTCATGTCCTTGAAGCTGGAAATCTTGTGATATCAGTTCAGGTTCTAAGAAATGTGACCAAGAATTTTGCCCCCGAGAATGAGCTAGGCCGTGGTGGATTCGGCGTTGTTTATAAGGGAGAATTGGATGATGGAACAAAAATTGCAGTAAAACGAATGGAAGCAGGTGTGATTAGTAACAAAGCCTTAGACGAATTCCAGGCTGAAATTGCAGTTCTATCAAAAGTCCGACACAGGCATCTAGTGTCTCTTTTGGGTTATTCCGTCCAAGGCAATGAGAGAATTCTAGTTTATGAGTATATGCCACAAGGAGCTCTTAGTAAGCATCTTTTCCATTGGAAGAGCTCAAAAATGGAGCCCCTGTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTATCTTCATTCTCTGGCTCACCAGAGCTTCATTCACAGAGATCTTAAGTCGTCAAATATTTTGCTCGCTGATGATTTTAGAGCAAAAGTATCAGATTTTGGATTGGTAAAACTTGCTCCTGAAGGCGAAAAATCTGTAGTGACCCGGCTTGCTGGGACTTTTGGATACTTGGCGCCAGAATATGCAGTTACAGGAAAAATCACAACCAAAGCAGATGTTTTCAGTTTTGGGGTTGTGCTAATGGAGCTGTTGACTGGATTAATGGCACTTGATGAGGATAGACCTGAGGAAAGCCAATACTTGGCAGCATGGTTCTGGCATATAAAATCAGATAAGAAGAAACTAATGGCTGCAATTGACCCAGCCCTTGACATAAACGAAGAAACGTTTGAGAGCATCTCCGTCATTGCTGAGCTAGCTGGGCACTGCACTGCCAGAGAACCAACCCAACGGCCTGATATGGGTCATGCTGTGAATGTTCTGTCACCACTTGTTGAAAAATGGAAACCATTTGATGATGACATTGAGGAGTATTCTGGCATCGATTATAGCCTTCCCCTTACCCAGATGGTGAAGGGCTGGCAGGAGGCAGAAGGAAAGGACTTGAGTTATATGGACTTAGAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGATTCTTTTACTTCTGCTGATGGCCGGTGA 2853 0.4479 MDGPSPMLLSTLVLVFSLAAPAMVLSATDPNDVKILNDFRNGLDNPELLPWPKNGGDPCGTPLWNYIYCDGNRVSQIQAKNLNLSGPLPQNLNQLTMLFNLGLQNNKLNGPLPSFSGLSKLKYAYLDNNNFDSIPSDFFDGLESLEVLALDRNNLNASTGGWQFPSSLQGSTQLTNLTCASCNLAGPLPDFLGKMNSLSFLILSGNNLTGEIPASLNGTALQLLWLNNQQGKGLTGTIDLVATMVSLSSLWLHGNSFTGSIPENIGDLTSLKDLNLNSNQLVGLIPDALGKMQLDNLDLSNNHLMGPIPNFKASKVSDDSNDFCQSKPGVPCAFEVMALLGFLDGLNYPSNLVNSWTLNNPCEGNWLGIKCNANGKVSMINLPNFNLTGTLSPSVANLGSLVEIRLEGNNLSGVVPSNWTSLTSLTLLDLSGNNISPPLPKFTNNGLKIMTEGNPLLNGSPEAPSSGNKSPPSGSGKAEPTPGNSNSSSNNSHETTKSKTKSLVSIVAPIAGVAAAAFLLIPLYVYYFRRRKDGDSLVIHPRDPSDSDNTVKITVANNTNGSISTVTGSVSGSRNSSGIGDSHVLEAGNLVISVQVLRNVTKNFAPENELGRGGFGVVYKGELDDGTKIAVKRMEAGVISNKALDEFQAEIAVLSKVRHRHLVSLLGYSVQGNERILVYEYMPQGALSKHLFHWKSSKMEPLSWKRRLNIALDVARGMEYLHSLAHQSFIHRDLKSSNILLADDFRAKVSDFGLVKLAPEGEKSVVTRLAGTFGYLAPEYAVTGKITTKADVFSFGVVLMELLTGLMALDEDRPEESQYLAAWFWHIKSDKKKLMAAIDPALDINEETFESISVIAELAGHCTAREPTQRPDMGHAVNVLSPLVEKWKPFDDDIEEYSGIDYSLPLTQMVKGWQEAEGKDLSYMDLEDSKSSIPARPTGFADSFTSADGR 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2277g00038 950 FunFam receptor protein kinase TMK1 566 681 - -
Gabi2277g00038 950 Pfam Leucine rich repeat 246 304 IPR001611 GO:0005515
Gabi2277g00038 950 CDD STKc_IRAK 610 883 - -
Gabi2277g00038 950 FunFam Receptor-like kinase TMK4 30 329 - -
Gabi2277g00038 950 Gene3D Ribonuclease Inhibitor 334 459 IPR032675 -
Gabi2277g00038 950 PANTHER OSJNBA0070M12.3 PROTEIN 14 950 - -
Gabi2277g00038 950 Gene3D Phosphorylase Kinase; domain 1 565 681 - -
Gabi2277g00038 950 SUPERFAMILY L domain-like 27 311 - -
Gabi2277g00038 950 MobiDBLite consensus disorder prediction 928 950 - -
Gabi2277g00038 950 Pfam Protein tyrosine and serine/threonine kinase 607 878 IPR001245 GO:0004672|GO:0006468
Gabi2277g00038 950 MobiDBLite consensus disorder prediction 458 497 - -
Gabi2277g00038 950 FunFam receptor protein kinase TMK1 682 899 - -
Gabi2277g00038 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 729 741 IPR008271 GO:0004672|GO:0006468
Gabi2277g00038 950 MobiDBLite consensus disorder prediction 450 497 - -
Gabi2277g00038 950 SMART LRR_typ_2 422 446 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 118 141 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 398 421 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 244 267 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 195 219 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 142 164 IPR003591 -
Gabi2277g00038 950 SMART LRR_typ_2 268 291 IPR003591 -
Gabi2277g00038 950 SUPERFAMILY L domain-like 335 444 - -
Gabi2277g00038 950 Gene3D Transferase(Phosphotransferase) domain 1 682 898 - -
Gabi2277g00038 950 ProSiteProfiles Protein kinase domain profile. 604 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2277g00038 950 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Gabi2277g00038 950 Pfam Leucine rich repeat N-terminal domain 336 372 IPR013210 -
Gabi2277g00038 950 SMART serkin_6 604 884 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2277g00038 950 FunFam Leucine-rich repeat receptor-like kinase 334 460 - -
Gabi2277g00038 950 ProSitePatterns Protein kinases ATP-binding region signature. 610 632 IPR017441 GO:0005524
Gabi2277g00038 950 Gene3D Ribonuclease Inhibitor 29 330 IPR032675 -
Gabi2277g00038 950 SUPERFAMILY Protein kinase-like (PK-like) 581 880 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2277g00038 Gabi-Chr2277 297571 301270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2277g00038 83 885 Receptor kinase-like Gene Family AT5G07280 32.763 2.00e-86 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Gabi2277g00038 PK_Tyr_Ser-Thr 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2277g00038 K00924 - gmx:100305366 1463.74